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313 protocols using safranin o

1

Analyzing Femoral Cartilage Mitochondrial Function

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Femora were isolated and fixed with 4% paraformaldehyde for 18 h. Fixed samples were decalcified using 0.5 M EDTA (pH 8.0), embedded in paraffin, and sectioned into 7-μm sections using a microtome (HM355 S; Thermo Fisher Scientific). The morphological organization of the PFE was evaluated on deparaffinized sections by safranin O staining (0.1% safranin O; Sigma–Aldrich). Activity of the mitochondrial complex IV (CYTOCOX) and complex II (SDH) was assessed on cryoembedded tissue. Isolated cartilage of the proximal femoral end was embedded in optimal cutting temperature compound medium (Tissue-Tek; Sakura), shock frozen in liquid nitrogen, and sectioned using the CM3050 cryostat (Leica Biosystems). About 7-μm cryosections were stained with a 1 mg/ml 3,3-diaminobenzidine (Sigma–Aldrich) solution for 30 min at 37 °C to visualize CYTOCOX activity (43 (link)). After washing with PBS, sections were treated with 2 mg/ml nitrotetrazolium blue chloride (Sigma–Aldrich) solution containing 0.2 M sodium succinate (Sigma–Aldrich) and 50 mM MgCl2 (Merck KGaA) for 2 h at 37 °C to detect SDH activity. Stained sections were embedded in Kaiser's glycerol gelatine (Merck KGaA) and analyzed using a Nikon Eclipse TE2000-U microscope (Nikon).
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2

Ocular Tissue Histological Staining

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Following euthanasia, ocular tissues excised from the mice of defined ages from E12.5 to adult were fixed in 4% buffered paraformaldehyde (PFA) for 1 hour at room temperature for subsequent investigation. The ocular tissues of E12.5 mice were embedded in paraffin. The paraffin sections of E12.5 mice were stained with hematoxylin and eosin. For Toluidine Blue O staining, 0.4% (w/v) Toluidine Blue O (Cas No. 92-31-9; Sigma-Aldrich, USA) was dissolved in 60% ethyl alcohol acidified with hydrochloric acid (pH 2.0). Corneas were collected with intact limbus and fixed in 95% ethyl alcohol for 30 minutes. Next, they were washed in distilled water several times and stained with 0.4% Toluidine Blue O for 10 minutes54 (link). For Alcian Blue/Safranin O staining, 1% (w/v) Alcian Blue 8GX (Cas No. 33864-99-2; Sigma-Aldrich, USA) was dissolved in 0.7 M hydrochloric acid, and 0.5% (w/v) Safranin O (Cas No. 477-73-6; Sigma-Aldrich, USA) was dissolved in 0.125 M hydrochloric acid. Corneas with complete limbus were stained in 1% Alcian Blue for 45 minutes and, after rinsing with distilled water, stained with 0.5% Safranin O for 10 minutes54 (link).The stained corneas were washed several times with distilled water, cut radially, and flattened with a coverslip. All of the samples were analyzed with a DeltaVision microscopy imaging system (Applied Precision, Issaquah, WA, USA).
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3

Dental Pulp Stem Cell Chondrogenesis

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A cellular density of 30,000 dental pulp of stem cells in a volume of 10 µL as a microdrop was cultured on 4-well plates. The adherent cells were incubated with the differentiation kit medium (StemPro® Differentiation Kits, Thermo Fisher Scientific TM), Alpha-MEM supplemented with 10% FBS, 1% PenStrep®, 0.1 µM dexamethasone, 5 µg/mL insulin, 10 ng/mL TGF-beta 1, and 50 µg/mL ascorbate-2-phosphate. After 2 weeks in culture, the cellular micro masses were verified, and the differentiation was stopped. The cells were stained with Safranin-O (Sigma, St. Louis, MO, USA), by preparing a 0.1% Safranin O solution. Finally, the cells were washed 5 times with 0.15 mL/cm2 absolute ethanol (100%) and 5 times with bi-distilled water and visualized using a bright-field microscope Olympus CKX41 (Tokyo, Japan).
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4

Safranin O Staining of Plant Tissues

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Safranin O (Sigma, S8884,Munich, Germany) was dissolved in water (5 mg/mL), as previously reported [24 (link)]; the whole plants or excised leaves were harvested at the indicated time points and submerged into a Safranin O solution for 0.5–1 h, allowing the dye to enter the tissue from the stomata and incision. Next, the material was washed with water to remove the surplus dye. The stained starch granules were visualized in the background of chloroplast auto-fluorescence with a strong contrast by selecting the proper pseudo-color.
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5

Joint Tissue Histological Staining and Scoring

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Joint tissue sections were deparaffinized in xylene for 15 min and hydrated in an ethanol series. For H&E staining, the sections were incubated with Harris hematoxylin (Sigma-Aldrich) for 10 min, washed in tap water, and dipped sequentially in 1% HCl, 0.2% NH4OH, and eosin (Sigma-Aldrich) for 90 sec and washed. For safranin O staining, the sections were incubated in Weigert's iron hematoxylin (Sigma-Aldrich) for 10 min, washed in tap water for 10 min, incubated in Fast green (Sigma-Aldrich) for 5 min, dipped in 1% acetic acid 2 to 3 times, incubated in safranin O (Sigma-Aldrich) for 5 min and washed. For toluidine blue staining, the sections were incubated in toluidine blue for 3 min. Each stained section was subsequently washed in tap water, dehydrated in an ethanol series, dipped in xylene, and mounted. Inflammation and joint destruction scores were measured by three independent investigators. Inflammation scores were measured by adding scores, graded as 0-3, were based on the layer status of synovial membranes and scores, graded as 0-3, were based on the infiltration of lymphocytes. Joint destruction scores were measured by adding scores, graded as 0-3, were based on cartilage erosion, and scores, graded as 0-3, were based on pannus invasion into the cartilage. The detailed scoring method was described in reference study (19 (link)).
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6

Mitochondrial Membrane Potential Dynamics

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The Ca2+-induced modifications of mitochondrial transmembrane potential (ΔΨ) were measured by the evolution of fluorescence of Safranin O (Sigma-Aldrich) at 495 nm (excitation)/586 nm (emission) in the presence of energized mitochondria. The mitochondria were preincubated for 2 min in the chamber of the Hitachi F-3010 fluorometer at 37°C with a solution containing 320 mM mannitol, 10 mM Tris HCl (pH 7.4), 8 mM Tris-phosphate (H3PO4 neutralized with Tris base up to pH 7.4), 4 mM MgCl2, 1 mg/ml BSA fatty acid-free (Sigma-Aldrich), 1 µM rotenone (Sigma-Aldrich), and 5 µM Safranin O (Sigma-Aldrich), in the absence or presence of 1 mM ADP. After mitochondrial energization with 10 mM succinate and rapid decrease in fluorescence intensity, successive pulses of 10 µM CaCl2 allowed measurements of total Ca2+ load ([Ca2+]t) required for complete depolarization (completed by adding 1 µM FCCP) and of the time necessary for 50% recovery of the baseline (t1/2).
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7

Chondrocyte Inflammatory Response Evaluation

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To mimic the OA environment in in vitro cell culture conditions, TC28a2 cells were seeded in the center of the individual wells of 24-well plates at 1×105 cells per well in a 10-µL volume. The cells were then allowed to adhere for 2 h in a cell culture incubator. Next, DMEM-HG supplemented with 1% insulin transferrin selenium-A (ITS-A; Invitrogen, Carlsbad, CA, USA) was added gently. IL-1β (R&D Systems, Minneapolis, MN, USA) was chosen to induce and maintain inflammatory conditions, and the concentration of IL-1β was 10 ng/mL, based on our previous results.15 (link) The cells were maintained for 5 d in the absence or presence of IL-1β and stained with 1% safranin O (Sigma) solution to visualize proteoglycan content produced by the chondrocytes. Crystal violet (CV; Merck, Darmstadt, Germany) staining was performed to compare the density of the cells stained by safranin O. The CV staining method has been described previously.16 (link) For quantitative analysis, absorbance was detected at 490 nm after destaining with 50% acetic acid solution for 20 min. Each safranin O value was normalized to absorbance from CV staining.
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8

Histological Analysis of Tissue-Engineered Constructs

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At the end of 28 days of culture, beads were fixed with 4% paraformaldehyde in 100 mM sodium-cacodylate buffer, pH 7.4, for 4 h at 4°C; 20 mM CaCl2 was added to prevent disintegration of the beads. After washing overnight at 4°C in 100 mM sodium-cacodylate buffer, the beads were dehydrated in graded series of methanol, placed in a xylene wash before being embedded in paraffin. Five μm sections were cut with a microtome (Leica RM 2145; Leica, Diegem, Belgium) rehydrated and stained with hematoxylin-eosin, alcian blue or safranin-O/fast green. To visualize chitosan-FITC, hematoxylin-eosin stained sections of beads were observed using H3 filtercube (Leica). Alcian blue and safranin-O/fast green staining methods were used to analyze cartilage tissue formation. For safranin-O/fast green staining, sections were counterstained with hematoxylin (Merck, Darmstadt, Germany) and fast green (Merck) to visualize cells and cell nuclei, respectively. safranin-O (Sigma) was used for visualization of glycosaminoglycans (GAGs) in red. Sections were also stained with alcian blue solution (1% in acetic acid) to visualize extracellular GAGs in blue.
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9

Histological Analysis of Limb Development

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Specimens were fixed in 4% paraformaldehyde at indicated time point for 24 h overnight at 4C before being dehydrated and paraffin embedded. Forelimbs were sectioned at 7 μm thickness. For Safranin O/Fast Green staining, sections were deparaffinized and rehydrated before being stained in Weigert’s Iron Hematoxylin (Sigma) and 0.02% aqueous Fast Green (Sigma) followed by a rinse in 1% acetic acid and 0.1% aqueous Safranin-O (Sigma). For immunohistochemistry, ImmPRESS Excel amplified polymer staining kit (Vector Labs) was used [60 ]. Primary antibodies used for immunohistochemistry were rabbit anti-Osx/Sp7 (1:500) (Abcam, Ab22552), rabbit anti-Runx2 (1:500) (Santa Cruz, Sc-10,758 M-70), and rabbit anti-Gli1 (Santa Cruz, Sc-20,687 H-300) (1:200). For immunocytochemistry, mesenchymal progenitors were plated on chamber slides and allowed to adhere for 24 h. Cells were then fixed with 4% paraformaldehyde and stained with mouse anti-acetylated alpha tubulin (1:200) (R&D systems T7451 6-11B-1) overnight at 4C followed by chicken anti-mouse Alexafluor 647 (1:200) (Invitrogen) and DAPI counterstain.
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10

Histological and Immunohistochemical Analysis of Limb Development

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Specimens were xed in 4% paraformaldehyde at indicated time point for 24h overnight at 4C before being dehydrated and para n embedded. Forelimbs were sectioned at 7 micron thickness. For Safranin O/Fast Green staining, sections were depara nized and rehydrated before being stained in Weigert's Iron Hematoxylin (Sigma) and 0.02% aqueous Fast Green (Sigma) followed by a rinse in 1% acetic acid and 0.1% aqueous Safranin-O (Sigma). For immunohistochemistry, ImmPRESS Excel ampli ed polymer staining kit (Vector Labs) was used [60] . Primary antibodies used for immunohistochemistry were rabbit anti-Osx/Sp7 (1:500) (Abcam, Ab22552), rabbit anti-Runx2 (1:500) (Santa Cruz, Sc-10758 M-70), and rabbit anti-Gli1 (Santa Cruz, Sc-20687 H-300) (1:200).
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