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63 protocols using rpmi 1640 media

1

Synchronized Cell Cycle Analysis of Multiple Myeloma

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Human MM cell lines U266, RPMI8226 and OPM-2 were purchased from DMSZ Germany, whereas MM1.S cells were kindly provided by Dr. Renate Burger (Division of Stem Cell Transplantation and Immunotherapy, Kiel, Germany) and cultured in RPMI-1640 media (BioWhittaker, Walkersville, MD, USA) supplemented with 10% of FBS (BIOCHROMAG, Leonornstr., Berlin, Germany), 2 mM L-Glutamine (BIOCHROMAG, Leonornstr., Berlin, Germany), streptomycin 100 U/ml, penicillin 100 U/ml and maintained in 5% CO2 at 37°C. Hypoxia (1% pO2) was generated in an Vivo2300 hypoxic workstation (Ruskinn Technologies, Ireland). Mononuclear cells from bone marrow aspirates or peripheral blood samples were isolated by density gradient centrifugation over Ficoll-Paque Plus (Amersham Biosciences, Piscataway, NJ, USA). CD138+ and CD34+ cells were then isolated by immunomagnetic bead positive selection in a Mini MACS LS column following the manufacturer's protocol (Milteny Biotech, Auburn, CA). The purity of MM cells was confirmed by flow cytometry analysis using phycoerytrin-conjugated anti CD138/CD34 antibody (Milteny Biotech, Auburn, CA). Patient samples were collected after informed consent.
To analyze S-phase progression MM cells were synchronized in the presence of 2 mM Thymidine (Sigma Aldrich, St Louis, MO, USA) for 48h, then released in complete media for up to 48h. Cell cycle analysis was then performed.
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2

Retroviral Transduction of Mouse Ba/f3 and HPC-LSK Cells

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Mouse Ba/f3 cell line retrovirally transfected with BCR-ABL1-GFP encoding either p190/p210 was a kind gift from Prof. Nikolas von Bubnoff (Universitätsklinikum Freiburg, Germany). HPC-LSK progenitor cell lines [25 ] were generated in Prof. Veronika Sexl lab (University of Veterinary Medicine of Vienna, Austria), and it was similarly retrovirally transfected with respective GFP-marked transcript. In both p210-Ba/f3 and p210-HPC-LSK cell lines, cells were expressing e14a2 (b3a2) transcript. Cytokine-independent transduced Ba/f3 cells were grown in RPMI-1640 media (Lonza), supplemented with 10% FBS, 2 mM L-glutamine (Lonza) and 100 U/mL penicillin and 100 μg/mL streptomycin (Gibco). HPC-LSK cells were cultured in IMDM media (Sigma), supplemented with 5% FBS, 0.75 × 10−4 M 1-Thioglycerol (Sigma), 12.5 ng/ml recombinant human IL6 (Peprotech), 2 mM L-glutamin, and antibiotics as indicated for Ba/f3 cells (for both parental and transduced lines) in addition to inhouse-prepared stem cell factor (only for parental line).
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3

Quantitative Proteomics Sample Preparation

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Acetonitrile (LC MS grade), trifluoroacetic acid (TFA), formic acid (FA) and water (HPLC grade) were obtained from Fisher Scientific, Loughborough, UK. RPMI 1640 media, l-glutamine and heat inactivated calf serum (HI FCS) were obtained from Lonza. All other chemicals including, trypsin (proteomics grade) and propionic anhydride were purchased from Sigma, Gillingham, UK.
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4

Reagents and Antibodies for T-cell Culture

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AIM-V media and CD4+ and CD8+ Dynal beads were purchased from Invitrogen. RPMI-1640 media and X-Vivo 15 media (BioWhittaker) were from Lonza Biologics, Inc. Pooled Human AB Serum (PHS) was from Valley Biomedical. Ficoll-Paque Premium was from GE Healthcare Sciences. Aldrithiol-2 (AT-2) and reduced L-Glutathione were from Sigma-Aldrich. Good manufacturing practice-certified (GMP-certified) Interleukin-2 (IL-2), GMP-certified Interleukin-4 (IL-4), Granulocyte-Macrophage Colony Stimulating Factor (GM-CSF), GMP-certified Anti-CD3 antibody, CliniMACS CD4 and CD14 microbeads, CliniMACS LS Tubing sets, CryoMACS DMSO and CliniMACS PBS/EDTA buffer were from Miltenyi Biotec, Inc. Polyinosinic-polycytidylic acid – poly-L-lysine carboxymethylcellulose (Poly-ICLC) was from Oncovir, Inc. Fluorescent antibodies for IL-2, -IFNγ, -TNFα, -MIP-1β, -CD3, -CD4, and -CD8 were purchased from BD biosciences. Antibodies for CD86, -CD14, -CD11c, and -HLA-DR were purchased from Biolegend. Recombinant human IL-2 and IL-7 were from R&D Systems. The following antibodies were manufactured in-house at the AIDS and Cancer Virus Program, Leidos Biomedical Research, Inc., Frederick National Laboratory: anti-p24CA [94–0001], anti-p17MA [R193244], anti-gp120HIV [P3F5-D5-F8]. Anti-gp41TM(4E10) was obtained from Polymun [AB004].
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5

Cultivation and isolation of murine and human macrophages

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Experiments were conducted with RAW264.7 cells (ATCC TIB-71), a leukemic murine macrophage cell line, or primary MDMs derived from human blood. RAW264.7 cells were cultivated in Dulbecco’s modified Eagle’s medium (DMEM) supplemented with 2 mM L-Glutamine, 100 Units/mL streptomycin, 0.1 mg/mL penicillin, and 10% v/v Foetal bovine serum (FBS) (all media components sourced from Sigma-Aldrich). RAW264.7 cells were passaged into fresh media upon reaching 70–80% confluence. All experiments carried out between passages 5 and 20.
MDMs were isolated as described previously [56 (link)]. Briefly, peripheral blood mononuclear cells were isolated by Ficoll Plaque (GE Healthcare) density centrifugation, seeded in 24 well plates at 2x106 cells/well in RPMI-1640 media (Lonza) supplemented with 2 mM L-Glutamine, 10% v/v newborn calf serum (Gibco) and incubated at 37°C, 5% CO2. Non-adherent cells were removed after 24 h, and adherent cells were fed with fresh RPMI-1640 supplemented with 2 mM L-Glutamine and 10% v/v low endotoxin heat-inactivated foetal bovine serum (Biosera). MDMs were used for experiments at 14 days post-isolation. Media was replaced every 2–3 days for all cells used.
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6

Antigen-Adjuvant Peptide Formulation

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Peptides from ovalbumin (SIINFEKL, “SIIN”; SIINFEKL‐R9; “SIIN*”) were synthesized by GenScript. The peptides had a purity >98% and were synthesized with or without a fluorescein (FITC) label on the N‐terminus. PolyIC was purchased from Invivogen. CpG (5′ T‐C‐C‐A‐T‐G‐A‐C‐G‐T‐T‐C‐C‐T‐G‐A‐C‐G‐T‐T 3′) was synthesized by IDT. Gold(III) chloride trihydrate (99.9%) and chitosan (MW = 2000) were from Sigma. TE buffer was purchased from Amresco (Solon, OH). RPMI‐1640 media was purchased from Lonza (Allendale, NJ) and fetal bovine serum (FBS) was supplied by Corning (Tewksbury, MA). 2‐Mercaptoethanol was purchased from Sigma–Aldrich (St. Louis, MO). HEPES and non‐essential amino acids were purchased from VWR (Radnor, PA). L‐Glutamine, Penicillin‐Streptomycin, and DAPI were purchased from Thermo Fisher Scientific (Grand Island, NY). Spleen Dissociation Medium was from STEMCELL Technologies (Vancouver, British Columbia, Canada). CD11c microbeads were purchased from Miltenyi Biotec (Cambridge, MA). Fluorescent antibody conjugates were purchased from BD (San Jose, CA).
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7

Culturing Human Melanoma Cell Lines

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The human melanoma cell lines, FM82, FM55 and FM6, were a kind gift from Professor D. Schadendorff of the Deutsches Krebsforschungszentrum (Heidelberg, Germany). All cells were cultured as previously described2 (link) in RPMI 1640 media (Lonza, Basel, Switzerland) supplemented with 10% (v/v) fetal calf serum and 1% (w/v) L-glutamine (Lonza). Cells were incubated at 37 °C in 5% (v/v) CO2 and 100% humidity. IFNα2a (IMR-236, Imgenex, San Diego, CA, USA) was used at a concentration of 1000 U/ml.
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8

Cell Culture Maintenance for Lung and Breast Cancer

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A549, H522, and H1666 human lung adenocarcinoma cells and T47D human breast cancer cells were from the Korea Cell Line Bank (Republic of Korea, Seoul) and the American Type Culture Collection (Manassas, VA). Cells were maintained in RPMI 1640 media (Lonza, Switzerland) supplemented with 10% fetal bovine serum (Serena, Germany) and 1% penicillin/streptomycin (Lonza) at 37°C and 5% CO2 in a humidified atmosphere. Media were replaced with phenol red-free RPMI 1640 (Gibco, MA) with 10% fetal bovine serum 48 h before experiments.
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9

Culturing Lung Cancer Cell Lines

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The lung cancer cell lines were kind gifts from Dr. Pan-Chyr Yang (National Taiwan University, Taipei, Taiwan) [27 (link)]. CL1-0, CL1-1, CL1-2 and CL1-5 cells were grown in RPMI 1640 media (LONZA, Walkersville, MD, USA); A549 and H1299 cells were grown in Dulbecco's Modified Eagle Medium (GIBCO, Carlsbad, CA, USA) media. Both culture media were supplemented with 10% fetal bovine serum (GIBCO, Carlsbad, CA, USA) and100 U/ml penicillin and 100 mg/ml streptomycin (HYCLONE, Logan, UT, USA). Cells were maintained at 37°C in 5% CO2 incubator.
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10

Synchronized Cell Lines for Hyperthermia

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Colorectal cancer cell line, RKO, lymphoblast cell lines, TK6TDP1+/+ and TK6TDP1-/-, and prostate cancer cell line, LNCaP, were cultured in standard RPMI-1640 media (Lonza, USA). Transformed mouse embryonic fibroblasts MEFTDP2+/+, MFETDP2-/-, and breast cancer cell line, MCF-7 were cultured in DMEM media (Lonza, USA). Both media were supplemented with 10% FBS (Sigma, USA) and 1% penicillin/streptomycin (Lonza, USA). The cells were maintained at 37 °C in 5% CO2 incubator. For cellular synchronization double-thymidine block was used by treatment with 2 mM thymidine for 16 h, then released for 6 h in fresh media, and finally treated with thymidine for another 16 h. Hyperthermia treatment was applied by maintaining cells at 37, 43, or 45 °C in CO2 incubators (for long term treatment) or water bath (short term treatment). All cell lines were obtained from the University of Sheffield (El-Khamisy lab) and routinely tested negative for mycoplasma.
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