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24 protocols using xm10 monochrome camera

1

Microscopy Imaging and Analysis Protocol

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Microscopy was performed using an Olympus BX61 VS120-S5 Virtual Slide Scanning System with UPlanSApo 40×/0.95 objective, Olympus XM10 monochrome camera, and Olympus VS-ASW FL 2.7 imaging software. Additionally, images were acquired using an Olympus FV1000 Confocal Microscope with UPlanFLN 40×/1.30 oil objective and Olympus FV-ASW version 4.2 imaging software. Live cell culture imaging was performed using an Olympus IX81 with LUCPlan FLN 20×/0.45 objective, Olympus XM10 monochrome camera and Olympus CellSens 1.13 software. Analysis and quantification were performed using Olympus CellSens 1.13, MetaMorph Premier 7.7.0.0, Adobe Photoshop CS6, and ImageJ software.
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2

Immunofluorescence Characterization of iPSCs

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At passage 18, iPSCs were fixed in 4% PFA (Santa Cruz Biotechnologies) for 10 min at room temperature (RT), washed twice with 1x PBS, then permeabilized for 30 min at RT with 0.1% Triton X-100. Cells were then incubated with Protein Block (Agilent Dako, Santa Clara, CA) for 30' at RT followed by primary antibodies for markers of stemness or differentiation (Table 2) in 1x PBS + 1% BSA over-night at RT. After washing twice, when required, cells were incubated with secondary antibody (Table 2) in 1x PBS + 1% BSA for 1hr at RT, followed by washing with 1x PBS + 1% BSA. Nuclei were stained with DAPI and cells visualized under an Olympus IX73 inverted microscope connected to a XM10 monochrome camera (Olympus, Tokyo, Japan).
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3

Immunocytochemical Staining Protocol

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Cells were fixed in 4% paraformaldehyde (PFA) for 15 min at room temperature (RT) and washed twice with 1× PBS before being permeabilized with 0.2% Triton X-100 in 1× PBS for 10 min. Cells were rinsed twice in 1% bovine serum albumin (BSA) in 1× PBS and blocked for 30 min at RT with DAKO blocking buffer (Agilent). Cells were incubated with primary antibodies in 1% BSA at 4 °C for O/N, and then washed twice and incubated with the appropriate secondary antibody for 1 h at RT (Table 3). Finally, cell nuclei were stained with DAPI (1:1000) at RT for 5 min, washed twice and visualized and captured using an Olympus IX73 inverted microscope connected to a XM10 monochrome camera (Olympus, Tokyo, Japan).
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4

Immunocytochemical Staining Protocol

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Cells were fixed in 4% paraformaldehyde (PFA) for 15 min at room temperature (RT) and washed twice with 1× PBS before being permeabilized with 0.2% Triton X-100 in 1× PBS for 10 min. Cells were rinsed twice in 1% bovine serum albumin (BSA) in 1× PBS and blocked for 30 min at RT with DAKO blocking buffer (Agilent). Cells were incubated with primary antibodies in 1% BSA at 4 °C for O/N, and then washed twice and incubated with the appropriate secondary antibody for 1 h at RT (Table 3). Finally, cell nuclei were stained with DAPI (1:1000) at RT for 5 min, washed twice and visualized and captured using an Olympus IX73 inverted microscope connected to a XM10 monochrome camera (Olympus, Tokyo, Japan).
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5

Microscopy Imaging Techniques

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Histological images were captured on a Leica DM5500B microscope with a DFC450 digital camera (Leica Microsystems). Most immunolabeled chromosome spread images were taken on a Leica DM5500B microscope with an ORCA Flash4.0 digital monochrome camera (Hamamatsu Photonics). Super-resolution immunolabeled chromosome spread images were taken on an Olympus BX51 microscope with an XM10 monochrome camera at the Penn Vet Imaging Core. Images were processed using Photoshop (Adobe) and ImageJ v1.44 software packages. Super-resolution imaging microscopy analysis was performed using DeltaVision OMX SR imaging system and softWoRx processing software.
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6

Quantitative Microscopic Analysis of Adipose Markers

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Microscopy was performed using an Olympus BX61 VS120-S5 Virtual Slide Scanning System with UPlanSApo 40×/0.95 objective, Olympus XM10 monochrome camera or Allied vision Pike F-505C color camera, and Olympus VS-ASW FL 2.7 imaging software. Confocal images were acquired using an Olympus FV1000 Confocal Microscope with UPlanFLN 40×/1.30 oil objective and Olympus FV-ASW version 4.2 imaging software. Perilipin-1 quantification was performed by thresholding the image to exclude non-specific staining and then calculating the area of each lipid deposit encircled by perilipin-1 (excluding those in the epi- or perimysium) using MetaMorph software (Molecular Devices). The total area encircled by perilipin-1 was calculated for all lipid deposits across the muscle and expressed relative to the total cross-sectional area. PDGFRα and AnxA2 positive area was calculated using CellSens software (Olympus) by thresholding to remove non-specific staining and calculating the total positive area (again, excluding any epi- or perimysial staining) relative to the entire muscle cross-section.
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7

Virtual Slide Scanning Microscopy Techniques

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Microscopy was performed using an Olympus BX61 VS120-S5 Virtual Slide Scanning System with UPlanSApo 40x/0.95 objective, Olympus XM10 monochrome camera, and Olympus VS-ASW FL 2.7 imaging software. Analysis and quantification were performed using Olympus CellSens 1.13, Adobe Photoshop CC and FIJI ImageJ software.
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8

Immunofluorescent Staining of HAP1 Cells

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For immunhistochemical staining of HAP1 cells, culture media was aspirated and cells were washed once with 1× PBS. Cells were fixed with ice-cold 4% paraformaldehyde in 1× PBS containing 15% sucrose for 20 min at room temperature (RT) and subsequently permeabilized with 0.1% Triton X-100 in 1× PBS for 3 min at 4 °C. For F-actin staining, Phalloidin-iFluor 594 (Abcam, Cambridge, United Kingdom) was diluted 1 : 1000 in 1% bovine serum albumin (Carl Roth, Karlsruhe, Germany) in 1× PBS and for staining of cell nuclei 0.5 μg mL−1 DAPI (Carl Roth) was added. Cells were incubated for 1 h at RT, washed with 1× PBS and coverslips were mounted on microscope slides with Shandon Immu-Mount mounting media (Thermo Fisher Scientific).
Bright-field images of printed HAP1 and HEK293H cells were captured with a CKX53 inverted microscope with integrated Phase Contrast (iPC) and a XM10 monochrome camera (Olympus, Shinjuku, Japan). Fluorescence images were acquired with an IX83 inverted imaging system with a DP80 camera (Olympus) and a 4-channel high-specification LED System (Judges Scientific, London, United Kingdom). Olympus cellSense software was used with both microscopes, and adjustments of brightness and contrast were carried out with ImageJ (NIH, Bethesda, MD, USA).
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9

Induction of UppS and RcsA Expression

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Overnight cultures were diluted 1:200 in TB media containing carbenicillin (to select for puppS), 1 mM IPTG (to induce uppS expression), and tetracycline (to induce rcsA expression), and grown at 25 °C for 5 h. Live cells were spotted on 1% agarose pads and imaged by phase-contrast microscopy using an Olympus BX51 microscope fitted with an XM10 monochrome camera.
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10

Olympus BX61 Virtual Slide Scanning

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Images were acquired on the Olympus BX61 VS120‐S5 Virtual Slide Scanning System Microscope with UPlanSApo 20x/0.75 and 40x/0.95 objectives, Olympus XM10 monochrome camera, and Olympus VS‐ASW FL 2.7 imaging software. Analysis was performed using Olympus CellSens 1.13 and FIJI ImageJ software.
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