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30 protocols using bovine hemoglobin

1

Characterization of Cysteine Protease Inhibitors

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Hemin chloride, chloroquine, quinacrine, amodiaquine, mefloquine, 8-hydroxyquinoline, quinine, quinidine and the β-carbolines norharman, tryptoline, harman, and harmine were obtained from Sigma-Aldrich. Indazole compounds 1,1´-[2,2´-biphenyldiyl)bismethylene]bis(5-nitro-1H-indazol-3-ol) (DIM-32) and 1,1´-(o-xylylene)bis(5-nitro-1H-indazol-3-ol) (DIM-5) were previously synthetized45 (link). 3,3′,5,5′-Tetramethylbenzidine (TMB), 2,2′-azinobis(3-ethylbenzthiazoline-6-sulphonic acid) (ABTS) and tween 20 were obtained from Sigma and cysteine from Merck. DMSO and hydrogen peroxide (H2O2) were from Scharlau and Panreac, respectively. Globin was obtained from bovine hemoglobin (Sigma) by precipitation in acetone-0.1% HCl at low temperature89 (link),90 (link), and lab-stored crystallized and lyophilized bovine serum albumin (BSA) was from Sigma. cysteine proteases: papain from Carica papaya, ficin from fig tree latex and cathepsin B from bovine spleen were obtained from Sigma. The peptide Z-Phe-Arg-AMC was purchased from Bachem, and 7-amino-4-methylcoumarin (AMC) from Sigma.
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2

Fabrication of Affinity Silica Beads

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LC-MS grade acetonitrile and formic acid (99.99%) were acquired from Fisher Chemical (Fairlawn, NJ). Water was purified with a Nanopure Diamond water purifier (Barnstead International, Dubuqe, IA). (3-Amino)di-isopropylethoxysilane (APDIPES) was acquired from Gelest (Morrisville, PA). Bovine hemoglobin, pepsin enzyme, cyanoborohydride coupling buffer, sodium phosphate dibasic, trichloro(1H,1H,2H,2H-perfluorooctyl)silane, and deuterium oxide (99.9%) were acquired from Sigma-Aldrich (St. Louis, MO). AL-20 POROS beads were purchased from Applied Biosystems (Carlsbad, CA). N-hydroxylsuccinimide functionalized polyethylene glycol (NHS-PEG) with 450 polymer units (MW = 20 kDa) was purchased from Nanocs, Inc. (Boston, MA). Human [Glu1] fibrinopeptide was purchased from American Peptide Company (Sunnyvale, CA).
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3

Protein Characterization Protocol

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Human serum albumin (globulin and fatty acids free), bovine hemoglobin, human hemoglobin, α-chymotrypsin, α-chymotrypsinogen A from bovine pancreas, concanavalin A from Canavalia ensiformis (jack beans), cytochrome c from equine heart, β-lactoglobulin A and β-lactoglobulin B from bovine milk, ribonuclease A and ribonuclease B from bovine pancreas, subtilisin A from Bacillus licheniformis, and trypsinogen from bovine pancreas were purchased from Sigma–Aldrich. Lysozyme (salt free) from chicken egg white was obtained from Worthington Biochemical Corp. (Lakewood, NJ, USA). Porcine pancreatic lipase was purchased from USB Corp. (Solon, OH, USA). Purity of all proteins was verified by electrophoresis.
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4

In Vitro SAH Model in Mouse Hippocampal Neurons

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Insulin receptors are highly expressed in the brain, mainly distributed in the cortex, hippocampus, and hypothalamus [31 (link)]. Therefore, we chose the mouse hippocampal neuron HT22 cells. The cell lines were purchased from Shanghai Institute of Cell Biology, Chinese Academy of Sciences. The culture condition was DMEM medium containing 10% fetal bovine serum. Cells were incubated in incubators at 37°C and 5% CO2. Bovine hemoglobin (Sigma, USA) was dissolved in complete medium (25 μmol/L) and incubated to establish SAH model in vitro.
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5

Quantification of Phenolic Compounds

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Standards of phenolic acids and flavonoids (apigenin, 2,3-dihydroxybenzoic acid, caffeic acid, catechin, chlorogenic acid, chrysin, ferulic acid, galangin, gallic acid, hesperidin, m-hydroxybenzoic acid, p-hydroxybenzoic acid, 5-hydroxyferulic acid, kaempferol, methyl p-coumarate, morin, myricetin, naringenin, naringin, p-coumaric acid, pinocembrin, quercetin, quercitrin, rosmarinic acid, rutin, salicylic acid, salicylic acid glucoside, sinapic acid, syringic acid, trans-cinnamic acid, vanillic acid, p-coumaric acid-d6, and salicylic acid-d4) were purchased from Sigma-Aldrich (Steinheim, Germany).
The sodium molybdate dihydrate, sodium nitrite, sodium hydroxide, sodium carbonate, hydrogen peroxide, sodium ascorbate, dimethyl sulfoxide (DMSO), and bovine hemoglobin were also purchased from Sigma-Aldrich (Steinheim, Germany). The LC (liquid chromatography) grade methanol, analytical grade orthophosphoric acid, hydrochloric acid, aluminum chloride, sodium acetate, ethanol, and Folin–Ciocalteu reagent were purchased from Merck (Darmstadt, Germany). The DPPH (2,2-diphenyl-1-picrylhydrazyl) was obtained from Alfa-Aesar (Karlsruhe, Germany). All spectrophotometric data were acquired using a Jasco V-530 UV-Vis spectrophotometer (Jasco International Co., Ltd., Tokyo, Japan).
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6

Obtaining Cell Wall Proteins from Paracoccidioides

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P. lutzii (American Type Culture Collection—ATCC MYA-826—Pb01) and P. brasiliensis (ATCC 32069—Pb18) were maintained in Brain Heart Infusion (BHI) solid broth supplemented with glucose 4% (w/v) at 36 °C. To obtain cell wall proteins extracts, P. lutzii yeast cells were cultured in BHI liquid medium, supplemented with glucose 4% (w/v) for 72 h at 36 °C and under shaking at 120 rpm. Next, 5 × 106 cells/mL were transferred to McVeigh and Morton modified medium (MMcM) chemically defined liquid medium [35 (link)] without iron, supplemented with 50 µM of the iron chelator bathophenanthrolinedisulfonic acid (BPS—Sigma-Aldrich, St. Louis, MO, USA) and were maintained in this condition for 36 h in order to establish intracellular iron depletion. Finally, yeasts cells were transferred to MMcM containing bovine hemoglobin 10 µM (Sigma-Aldrich, St. Louis, MO, USA) or BPS 50 µM and maintained for 48 h.
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7

Assessing Cocaine-Induced Oxidative Stress

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All the reagents used were of analytical grade. Cocaine, 7-nitroindazole, and other chemicals, sucrose, Tris, DL-dithiothreitol, phenylmethylsulfonyl fluoride, potassium phosphate, calcium chloratum (CaCl2), magnesium chloratum (MgCl2), L-arginine, L-valine, bovine hemoglobin, beta-nicotinamide adenine dinucleotide 2′-phosphate reduced tetrasodium salt (NADPH), ethylenediaminetetraacetic acid (EDTA), bovine serum albumin (fraction V), reduced glutathione (GSH), oxidized glutathione (GSSG), glutathione reductase (GR), cumene hydroperoxide, Percoll, and MTT (3-[4,5-dimethylthiazol-2-yl]-2,5-diphenyltetrazolium bromide), were purchased from Sigma Chemical Co. (Taufkirchen, Germany). 2,2′-Dinitro-5,5′-dithiodibenzoic acid (DTNB) and D-glucose were obtained from Merck (Darmstadt, Germany). Dimethyl sulfoxide (DMSO) was purchased from Valerus (Sofia, Bulgaria).
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8

Bovine Hemoglobin and Bacterial Cultivation

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Bovine hemoglobin was obtained from Sigma Chemical (Sigma, China). Hemoglobin concentration was calculated on the basis of the hemin monomer. Hemoglobin solutions were filter sterilized with 0.45-μm Millipore filters. E. coli strains were grown on LB medium (Sigma-Aldrich, Product Number: L3522) aerobically at 37 °C. The solid media contained 1.5% Difco agar. R. anatipestifer strains were cultured on LB agar supplemented with 5% sheep blood or in TSB liquid medium (Solarbio, China) at 37 °C. When necessary, the medium was supplemented with appropriate antibiotics at the following concentrations: ampicillin (Amp), 100 μg/ml; kanamycin (Kan), 50 μg/ml; cefoxitin (Cfx), 1 μg/ml; erythromycin (Erm) 1 μg/ml; and spectinomycin (Spec), 60 μg/ml.
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9

Protein Extraction and Characterization

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Maltodextrin, bovine hemoglobin, L-leucine, L-tyrosine, pepsin from porcine gastric mucosa, bovine serum albumin (BSA), Folin–Ciocalteu phenol reagent, and 2,4,6-trinitrobenzenesulfonic (TNBS) acid were purchased from Sigma-Aldrich (St Louis, MO, USA). Acetone, HCl, sodium sulfite, and sodium hydroxide were purchased from LabScan (RCI Labscan Ltd., Bangkok, Thailand). Trichloroacetic acid (TCA), potassium sulfate (K2SO4), sodium chloride (NaCl), magnesium chloride (MgCl2), and lithium chloride (LiCl) were procured from Loba Chemi (Mumbai, Maharashtra, India). Electrophoresis chemicals were acquired from BioRad (Richmond, VA, USA). Whey protein isolate was purchased from ProflexTM (Power Corp. Co., Ltd., Bangkok, Thailand). Threadfin bream (24–48 h after capture) were bought from a local market. Kidney bean protein isolate (KBPI) was prepared as described by Gulzar et al. [15 (link)] with the aid of the pH shift process.
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10

Quantifying Hemolysis in Cell Filtration

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Hemolysis can be generated during filtration of red cells and could be a confounding factor in our analysis. Therefore, hemolysis of the units at each time point was quantified by means of a Drabkin's assay according to the manufacturer's instructions. Briefly, samples were incubated with Drabkin's reagent (Ricca Chemical Company, Arlington, Texas) for 30 minutes in the dark to convert hemoglobin to cyanmethemoglobin. Absorbance at 540 nm was measured on a Versamax microplate reader (Molecular Devices, Sunnyvale, California). A540 was converted to concentration using a standard curve of bovine hemoglobin (Sigma Aldrich, St. Louis, Missouri).
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