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Sulfo nhs lc lc biotin

Manufactured by Thermo Fisher Scientific
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Sulfo-NHS-LC-LC-Biotin is a water-soluble, amine-reactive biotinylation reagent. It contains two biotin moieties separated by a long, hydrophilic linker.

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41 protocols using sulfo nhs lc lc biotin

1

Phagocytosis Assay for Antibody-Mediated SUDV Neutralization

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Recombinant SUDV GP was biotinylated and coupled to 1 µm FITC+ Neutravidin beads (Life Technologies). Briefly, SUDV GP was biotinylated using Sulfo-NHS-LC-LC biotin (ThermoFisher Scientific), and excess biotin was removed using a Zeba desalting column (ThermoFisher Scientific). Biotinylated SUDV GP was incubated with Neutravidin-coated fluorescent beads (ThermoFisher Scientific) at 4 °C overnight (1 µg biotinylated protein per 1 µl of beads). Beads were washed twice with 0.1% BSA in PBS and resuspended in 100 µl of 0.1% BSA in PBS per 1 µl of coupled beads. Sera from vaccinated guinea pigs were diluted 1:100 in cell culture medium and incubated with GP-coated beads for 2 h at 37 °C. Freshly isolated neutrophils from donor blood were added at a concentration of 5.0 ×104 cells per well and incubated for 1 h at 37 °C. Cells were stained at 1:100 with CD66b (Pacific Blue, Clone G10F5; Biolegend cat # 305111), fixed with 4% paraformaldehyde, and analyzed by flow cytometry on a Sartorius iQue flow cytometer, and a minimum of 30,000 events were recorded and analyzed. Neutrophils were defined as SSC-Ahigh CD66b+. The phagocytic score was determined using the following formula: (percentage of FITC+ cells) x (median fluorescent intensity (MFI) of the FITC+ cells)/10,000.
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2

Cell Surface Protein Biotinylation

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Petri dishes were coated with poly-l-lysine before seeding and transfection. Two days after transfection, the cells were washed with PBS-CM (100 ml 10x PBS, 1 mM MgCl2, 0.5 mM CaCl2, pH 8.0 adjusted with NaOH, Milli-Q until total volume of 1000 ml) followed by adding 0.5 mg/ml Sulfo-NHS-LC-LC-biotin (Thermo fisher scientific, Rockford, USA). After 30 min incubation, cells were washed with 0.1% (w/v) PBS-CM BSA and PBS. Cells were then lysed with lysis buffer, and protein concentration was measured with a BCA test. Input samples were taken to be able to check transfection efficiency by performing Western blot. Then, lysates with the same amount of proteins (as calculated with the BCA test) were added with the neutravidin agarose beads (Thermo fisher scientific, Rockford, USA) and incubated overnight rotated at 4 °C. After incubation, protein lysates were washed with lysis buffer and Laemmli and DTT buffer were added and incubated at 37 °C for 30 min before loading the protein samples on SDS-PAGE.
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3

Cell Surface Biotinylation and Avidin-Coated Beads

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The cultured cells were washed with phosphate-buffered saline with glucose (PBS/G) consisting of 75 mM sodium phosphate (pH 7.3), 68 mM NaCl, and 20 mM glucose; suspended in 1.0 mM Sulfo-NHS-LC-LC-Biotin (Thermo Fisher Scientific, Waltham, MA) in PBS/G; and kept for 15 min at room temperature (RT), as previously described (28 (link), 29 (link), 30 (link), 33 , 36 (link), 37 (link)). Polystyrene beads (1.0 μm in diameter) (Polysciences, Warrington, PA) were coated with avidin (Sigma-Aldrich, St. Louis, MO), as previously described (29 (link)).
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4

Surface Biotinylation and SDS-PAGE Analysis

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Surface biotinylation was performed using Sulfo-NHS-LC-LC-Biotin (Thermo Fisher Scientific, EZ-Link Sulfo-NHS-LC-LC-Biotin) and streptavidin agarose beads (Thermo Fisher Scientific). Samples were run on an 8% SDS–polyacrylamide gel electrophoresis (SDS-PAGE) gel. Hippocampal homogenates from WT and Lrp6-val mice at 4 months old were resolved on 8 to 12% SDS-PAGE gels. Two bands were observed for Fz5-HA. Both bands were quantified as these bands are likely to represent changes in the glycosylation of this receptor at the surface (59 (link)).
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5

Biotinylated Cell Surface Proteins

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Sulfo-NHS-LC-LC-biotin (Thermo Scientific) was added to the medium of HepG2 or NTCP-expressing HepG2 cells for 30 min. The medium was withdrawn and the cells were washed with PBS (-) three times and then lysed in a lysis buffer (50 mM NaPO4-0.3 M NaCl-0.1% Triton®-X100). After excluding the cell debris, the lysate was incubated with streptavidin-Sepharose to pull down. The unbound fraction was obtained by centrifugation and the bound fraction was washed with the lysis buffer three times and eluted with 1× sample buffer (62.5 mM Tris-HCl, pH 6.8, 70 mM 2-mercaptoethanol 1 mg/mL bromo-phenol blue, 10% glycerol and 2% SDS).
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6

Quantifying Cell Surface and Internalized Receptors

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HEK293 cells over-expressing FLAG-β2AR were surface labeled by sulfo-NHS-LC-LC-biotin at 4 °C according to manufacturer’s instructions (Thermo Scientific, MA) followed by 1 nM or 1 μM ISO stimulation for 10 min in warmed medium. Samples were then immediately placed into an ice bath, washed with ice-cold PBS and lysed by hypotonic buffer (10 mM Tris pH 7.4, 10 mM KCl, 1.5 mM MgCl2, 2 mM EDTA, with protease and phosphatase inhibitor cocktail). After removal of debris and nuclei by centrifugation at 1000 g for 10 min, streptavidin beads (Invitrogen, CA) were added into lysates to pulldown biotin-labeled PM proteins for 2 h at 4 °C. The intracellular organelles in the supernatant were then lysed to expose endocytosed biotin-labeled FLAG-β2AR by addition of detergent NP40 (1%) and NaCl (150 mM). streptavidin beads were added and incubated for another 2 h at 4 °C to collect the endosomal fraction. Beads were washed and eluted by 2×SDS loading buffer. The biotinylated proteins were analyzed by Western blot using antibodies at a 1:1000 dilution as indicated. Uncropped versions of the scans are presented in Supplementary Fig. 8a.
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7

Antibody-Dependent Phagocytosis Assays for SARS-CoV-2

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Antibody-dependent cellular phagocytosis and antibody-dependent neutrophil phagocytosis assays were conducted according to previously described protocols (39 (link), 40 (link)). SARS-CoV-2 antigens were biotinylated using EDC (Thermo Fisher) and Sulfo-NHS-LCLC biotin (Thermo Fisher) and coupled to yellow-green (505/515) fluorescent Neutravidin-conjugated beads (Thermo Fisher). Immune complexes were formed by incubating antigen-coupled beads for 2 h at 37°C with 1:100-diluted serum samples, then washed to remove unbound immunoglobulins. For ADCP, the immune complexes were incubated for 16 to 18 h with THP-1 cells (1.25 × 105 THP-1 cells/mL); and for ADNP, for 1 h with RBC-lysed whole blood. After incubation, cells were fixed with 4% paraformaldehyde (PFA). For ADNP, RBC-lysed whole blood was washed, stained for CD66b+ (Biolegend) to identify neutrophils, and fixed in 4% PFA. An iQue (IntelliCyt) platform was used to perform flow cytometry to identify the percentage of cells which had phagocytosed beads and the number of beads that had been phagocytosed. Phagocytic function is reported as a phagocytosis score (phagocytosis score = % positive cells × MFI of positive cells/10,000). Analysis was performed using IntelliCyt ForeCyt (v8.1).
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8

SARS-CoV-2 Spike Protein Phagocytosis Assay

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ADNP was conducted as previously described.64 (link) SARS-CoV-2 Spike proteins were biotinylated using EDC (Thermo Fisher) and Sulfo-NHS-LC-LC biotin (Thermo Fisher) and coupled to NeutrAvidin beads (Thermo Fisher, Cat# F8775). To form immune complexes, antigen-coupled beads were incubated for 2 h at 37°C with serum and then washed to remove unbound antibodies. The immune complexes were incubated for 1 h with RBC-lysed whole blood. Following the incubation, neutrophils were stained for CD66b+ (Biolegend, Cat# 305112) and fixed in 4% PFA.
Flow cytometry was performed to identify the percentage of cells that had phagocytosed beads as well as the number of beads that had been phagocytosed (phagocytosis score = % positive cells × Median Fluorescent Intensity of positive cells/10000). Flow cytometry was performed with an IQue (Intellicyt) or LSRII(BD), and analysis was performed using IntelliCyt ForeCyt (v8.1) or FlowJo V10.7.1.
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9

SARS-CoV-2 Multiplex Antigen Assay

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SARS-CoV-2 antigens used for functional and Luminex based assays included SARS-CoV-2 RBD (Sino Biological), SARS-CoV-2 spike protein (LakePharma) and SARS-CoV-2 N (Aalto Bio Reagents). Additional antigens included a mix of HA A/Michigan/45/2015 (H1N1), HA A/Singapore/ INFIMH-16–0019/2016 (H3N2), and HA B/Phuket/3073/2013 (Immunetech). Antigen was biotinylated using Sulfo-NHS-LC-LC biotin (Thermo Fisher Scientific) and desalted using Zeba Columns (Thermo Fisher Scientific).
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10

Biotinylation of SARS-CoV-2 Spike Antigens

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For ADCD, ADNP, and ADCP, SARS-CoV-2 wild-type (Lake Pharma) and variant spike antigen (B.1.1.7, B.1.351, B.1.617, P.1; Saphire Laboratory, La Jolla Institute for Immunology) were biotinylated with Sulfo-NHS-LC-LC biotin (Thermo Fisher Scientific), and excess biotin was removed by phosphate-buffered saline (PBS) buffer exchange in Zeba desalting 7-kDa cutoff spin columns (Thermo Fisher Scientific).
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