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160 protocols using fura 2

1

Intracellular Calcium Measurement in CSCs

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The increase in intracellular calcium levels after exposure of CSCs to sFRP4 was determined using the fluorescent radiometric Ca2+ indicator Fura-2 acetoxymethyl ester (Fura-2, 1μ mol/L, Molecular Probes) as previously reported [47 (link)]. U87 and U373 CSCs were treated with plain medium or S, T, or S+T for 24h and, after washing the cells, Fura-2 (1μ mol/L, Molecular Probes) was added to the cells in plain medium and incubated for 37°C for 45 min. Fluorescent intracellular Ca2+ flux was identified by fluorescence microscopy (450–480nm) and calorimetrically at 480nm.
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2

Zinc Binding Affinity of Fura-2 and C38/C96-R1 Tetramer

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All solutions were prepared using 20 mM MOPS (pH 7) and 150 mM NaCl pre-treated with Chelex 100 resin (BioRad). The concentration of a light-protected stock of Fura-2 (Invitrogen) was determined spectrophotometrically (ε362 = 27,000 M−1 cm−1).47 (link) A sample of C38/C96R14 (8.25 μM tetramer; 33 μM monomer) and Fura-2 (5 μM) was titrated with ZnCl2 while thermostatted at 22 °C with 5 min incubations. Fluorescence emission at 510 nm was monitored over a 250–450 nm excitation scan (Figure S6). Fluorescence intensity for the 335 nm excitation as a function of [ZnII] was modeled using Dynafit48 (link) as previously reported.20 (link), 23 (link), 25 (link) The data could be described by a sequential binding model with four dissociation constants (Table S3), and was plotted using Igor (WaveMetrics).
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Fura-2 Calcium Imaging in TR146 Cells

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TR146 cells were grown in a 96-well plate overnight until confluent. The medium was removed and 50 µl of a Fura-2 solution (5 µl Fura-2 (Life Technologies)(2.5 mM in 50% Pluronic F-127 (Life technologies):50% DMSO), 5 µl probenecid (Sigma) in 5 ml saline solution (NaCl (140 mM), KCl (5 mM), MgCl2 (1 mM), CaCl2 (2 mM), Glucose (10 mM) and HEPES (10 mM), adjusted to pH 7.4)) was added and the plate incubated for 1 h at 37°C/5% CO2. The Fura-2 solution was replaced with 50 µl saline solution and baseline fluorescence readings (excitation 340 nm/emission 520nm) taken for 10 min using a FlexStation 3 (Molecular Devices). Ece1 peptides were added at different concentrations and readings immediately taken for up to 3 h. The data was analyzed using Softmax Pro software to determine calcium present in the cell cytosol and expressed as the ratio between excitation and emission spectra.
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Fura-2 Calcium Imaging in TR146 Cells

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TR146 cells were grown in a 96-well plate overnight until confluent. The medium was removed and 50 µl of a Fura-2 solution (5 µl Fura-2 (Life Technologies)(2.5 mM in 50% Pluronic F-127 (Life technologies):50% DMSO), 5 µl probenecid (Sigma) in 5 ml saline solution (NaCl (140 mM), KCl (5 mM), MgCl2 (1 mM), CaCl2 (2 mM), Glucose (10 mM) and HEPES (10 mM), adjusted to pH 7.4)) was added and the plate incubated for 1 h at 37°C/5% CO2. The Fura-2 solution was replaced with 50 µl saline solution and baseline fluorescence readings (excitation 340 nm/emission 520nm) taken for 10 min using a FlexStation 3 (Molecular Devices). Ece1 peptides were added at different concentrations and readings immediately taken for up to 3 h. The data was analyzed using Softmax Pro software to determine calcium present in the cell cytosol and expressed as the ratio between excitation and emission spectra.
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Measuring Intracellular Calcium Levels in Cardiac Differentiated WJMSCs

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The increase in intracellular calcium levels after cardiac differentiation of WJMSCs was determined using the fluorescent radiometric Ca2+ indicator Fura-2 acetoxymethyl ester (Fura-2, 1 μmol/L; Molecular Probes, Invitrogen, Carlsbad, CA, USA) as reported previously [19 (link)]. After induction of WJMSCs with DC301 + DC302 as described, the cells were washed and Fura-2 (1 μmol/L; Molecular Probes) was added to the cells in plain medium and incubated for 37 °C for 45 min. Fluorescent intracellular Ca2+ flux was identified by fluorescence microscopy (450–480 nm) and calorimetrically at 480 nm.
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Calcium Imaging of hiPSC-Derived Cardiomyocytes

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The hiPSC‐CMs were dissociated and seeded in 24mm × 24mm coverslips for calcium imaging. Cells were loaded with 5 μmol/L Fura‐2, AM (Invitrogen) and 0.02% Pluronic F‐127 (Invitrogen) in Tyrodes solution (137 mmol/L NaCl, 5.4 mmol/L KCl, 1 mmol/L MgCl2, 10 mmol/L glucose, 1.8 mmol/L CaCl2, 1mM NaH2PO4 and 20 mmol/L HEPES at pH 7.4 with NaOH at 25°C) for 10 minutes at 37°C. Following Fura‐2, AM loading, cells were washed three times with Tyrodes solution. Ca2+ transients imaging was collected using the confocal microscope with a 40x lens using Zen software (Carl Zeiss). Cells were perfused with calcium‐free Tyrodes solution containing 0.5 mmol/L EGTA, and then the 5 mmol/L caffeine prepared in the same calcium‐free Tyrodes solution was delivered via perfusion apparatus. The analysis was performed using Zeiss physiology software.
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Intracellular Calcium Measurement

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Restriction and modification enzymes were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Digitonin, histamine, CPA, DMEM, trypsin, L-glutamine, and penicillin were purchased from Sigma-Aldrich (Saint Louis, MO, USA). BAPTA and Fura-2 were purchased from Invitrogen, Thermo Fisher Scientific (Carlsbad, CA, USA). All other materials were analytical or of the highest available grade.
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8

Glutamate-induced Calcium Signaling Assay

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5‐Methyl‐10,11‐di‐hydro‐5H‐dibenzo[a,d]cyclohepten‐5,10‐imine maleate (MK801) and isolectin‐B4‐FITC were purchased from Tocris (Bristol, United Kingdom). 7‐aminoactinomycin D (7‐AAD), lactate dehydrogenase (LDH), phenylmethanesulfonyl fluoride (PMSF), phosphatase inhibitor, protease inhibitor cocktails 2 and 3, Hoechst 33258, glutamate, β‐nicotinamide adenine dinucleotide (NADH), sodium pyruvate, β‐nicotinamide adenine dinucleotide 2′‐phosphate reduced tetrasodium salt hydrate (NADPH), MgSO4, and nitro blue tetrazolium were from Sigma Aldrich (Saint‐Quentin Fallavier, France). The ratiometric intracellular calcium probe Fura‐2, pluronic® F‐127 and Cell Tracker green were from Invitrogen (Cergy Pontoise, France). The Apo‐ONE homogeneous caspase‐3/7 kit was provided by Charbonnières‐les‐Bains, France. Isoflurane was from CSF (Cournon, France). Characteristics of the antibodies used in the present study for immunohistofluorescence and Western blot experiments are summarized in Table S1.
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9

GABAA receptor subunit characterization

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Gabazine, NS1619, KCl was obtained from Sigma (St. Louis, MO, USA). Muscimol, picrotoxin and bicuculline were obtained from Tocris (Bristol, UK). Propofol was obtained from MP Biomedical (Santa Ana, CA, USA). The fluorescent potentiometric probe (FLIPR) membrane potential assay kit was obtained from Molecular Devices (Sunnyvale, CA, USA). Trypsin 0.05%- EDTA and FURA-2 (calcium dye) were purchased from Invitrogen (Carlsbad, CA, USA). TRIzol reagent was obtained from Ambion (Austin, TX, USA). Immunoaffinity purified primary antibodies for the GABAA α4 subunit (LS-C15) were obtained from Lifespan Biosciences (Seattle, WA, USA).
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10

Preparing Calcium-Chelated Liposomes

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Chelated Ca2+/EGTA solutions containing 50 mM HEPES, pH 7.4, 100 mM KCl, and varying concentrations of Na2EGTA and CaCl2 (0 to 10 mM) were made by predicting [Ca2+]free with MaxChelator (http://maxchelator.stanford.edu/CaEGTA-TS.htm). Actual [Ca2+]free was verified in each solution by recording fluorescence excitation spectra of fura-2 (Invitrogen, 0.07 µM) at an emission wavelength of 510 nm on a LS55 fluorescence spectrophotometer (Perkin Elmer). [Ca2+]free was calculated as Kd × [(R − Rmin)/(Rmax − R)] × (Fmax380/Fmin380), where F380 is the fluorescence intensity at ʎexcit. = 380 nm and R is the ratio F340/F380. KdEGTA was measured at 34.906 nM.
Liposomes were formed by drying chloroform solutions containing 25% 1,2-dioleoyl-sn-glycero-3-phospho-L-serine (DOPS, Avanti Polar Lipids) and 75% 1,2-dioleoyl-sn-glycero-3-phosphocholine (DOPC, Avanti Polar Lipids)under a nitrogen stream. The phospholipids were resuspended in 50 mM HEPES, 100 mM KCl, pH 7.4 to a final concentration of 1 mg/ml, sonicated 5 times for 10 seconds and centrifuged for 90 min at 21,000 × g to clear the liposomes from large aggregates as described previously48 (link).
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