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5 protocols using ab126758

1

Investigating Synaptic Regulation in Alzheimer's

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Retinoic acid was obtained from Sigma-Aldrich China (Shanghai, China; R2625). Rapamycin was purchased from MedChemExpress (Shanghai, China; HY-10219). CTB-Alexa 488 and CTB-Alexa 555 were bought from BrainVTA (Wuhan, Hubei, China). The following antibodies were used in western blot: anti-CD82 (ab66400 & ab135779; Abcam; 1:1000); anti-synaptophysin (ab14692; Abcam; 1:1000); anti-p70S6k (2708T; Cell Signaling Technology; 1:1000); anti-p-p70S6k(9234T;Cell Signaling Technology; 1:1000); anti-β-actin (sc-47778; Santa Cruz; 1:1000); anti-TRAF2 (ab126758; Abcam; 1:1000); anti-Raptor (20984-1-AP; Proteintech; 1:1000).The following antibodies were used in immunofluorescence: anti-CD82 (ab66400; Abcam; 1:200); anti-Tuj1 (801201; Biolegend; 1:1000); anti-Iba1(ab48004;Abcam;1:100); anti-GAFP(ab4674; Abcam;1:100); anti-mCherry (ab167453; Abcam; 1:100); anti-synaptophysin (ab14692; Abcam; 1:200); anti-pS6(Ser 240/244)(5364T; Cell Signaling Technology; 1:1000); anti-TRAF2 (ab126758; Abcam; 1:400); anti-Raptor (20984-1-AP; Proteintech; 1:1000); anti-Lamp1 (15665, Cell Signaling Technology; 1:500).
Anti-β-Amyloid (2450; Cell Signaling Technology; 1:100) was used in immunohistochemistry.
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2

Western Blot Analysis of Signaling Proteins

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The protein was extracted with RIPA Lysis buffer (Boster, AR0102-100, Wuhan, China) and quantified by ultrastructure nucleic acid protein tester (Analytik Jena, Jena, Germany). Equal amounts of protein were separated by SDS-PAGE, immunoblotted with antibodies IRE1α (Proteintech, 27528-1-AP, Wuhan, China), anti-TRAF2 antibody (Abcam, ab126758, Cambridge, UK), anti-IKK-β antibody (Abcam, ab124957, Cambridge, UK), IκB-α antibody (CST, #4812, Boston, MA, USA), NF-κBp65 antibody (CST, #8242, Boston, US), ASK1 antibody (Proteintech, 67072-1-Ig, Wuhan, China), anti-JNK1 antibody (Abcam, ab199380, Cambridge, UK), and GAPDH antibody (Proteintech, 60004-1-IG, Wuhan, China). Antibody binding was detected using horseradish peroxidase-conjugated anti-rabbit IgG/anti-mouse IgG antibody (Proteintech, SA00001-1/SA00001-2, Wuhan, China) and visualized with Chemiluminescence Solution (Abbkine, BMU102-CN, Wuhan, China).
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3

Exosome Protein Profiling of M2 Macrophages

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Raw264.7 cells and M2 macrophages were lysed using the RIPA lysis buffer on ice. Proteins were extracted from M2-exos using the exosome protein extraction kit (EZBioscience, Roseville). Afterwards, an equal amount of proteins were run to separate using the 10% SDS-PAGE and transferred to PVDF membranes (Millipore, Billerica). The membranes were blocked using 5% skim milk and incubated the following primary antibodies at 4 °C overnight. The antibodies (Abcam, Cambridge) including anti-TSG101 (ab125011, 1/1000), anti-CD9 (ab263019, 1/1000), anti-TNF-α (ab183218, 1/1000), anti-TRAF2 (ab126758, 1/1000), anti-FADD (ab124812, 1/1000), and anti-GAPDH (ab9485, 1/2500). A secondary antibody (ab97051, 1/10,000) was continued to incubate with the membranes at room temperature for 1 h. The bands were visualized using an ECL western blotting substrate kit (Abcam).
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4

Protein Quantification and Detection

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Whole cell extracts were prepared in RIPA buffer containing a protease inhibitor cocktail. Total protein was separated by SDS-PAGE. The following antibodies were used: anti-hnRNPA2B1 (ab31645, Abcam, 1:500), anti-NEDD8 (ab81264, Abcam, 1:5000), anti-NF-κB1 (ab209795, Abcam, 1:1000), anti-TRAF2 (ab126758, Abcam, 1:1000), anti-MTPα (PA5-29813, Invitrogen, 1:1500), and anti-actin (ab8226, Abcam, 1:500).
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5

Microglial Autophagy Signaling in Ischemic Penumbra

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Immuno uorescent staining was used to visualize the microglial expression of Sphk1 (NOVUS Biologicals, JA31-14), MAPLC3 II (Cell Signaling Technology, D11) , SQSTM1/p62 (Abcam, ab155686), and TRAF2 (Abcam, ab126758) in our experimental system. Brie y, we initially used xylene to depara nize ischemic penumbra tissue sections from model animals. Sections were then treated with citric acid to facilitate antigen retrieval, followed by three washes in PBS. Samples were next blocked for 1 h using serum, followed by probing overnight at 4°C with appropriate primary antibodies, further washing, and probing for 1 h at room temperature using uorescently conjugated secondary antibodies. Samples were then imaged via Olympus FV300 confocal microscope (200×). To ensure accuracy, 4-5 elds of view in different cortical regions were selected at random, with positive areas being averaged across these regions.
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