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Cd27 apc

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CD27-APC is a cell surface marker that belongs to the tumor necrosis factor receptor superfamily. It is expressed on a variety of immune cells, including T cells, B cells, and natural killer cells. This antibody is conjugated with the fluorescent dye allophycocyanin (APC), which can be used in flow cytometry and other immunological assays to detect and quantify CD27-positive cells.

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34 protocols using cd27 apc

1

Multiparametric Flow Cytometry Immunophenotyping

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Blood samples were analysed by 8-colour flow-cytometry assays, which were performed similarly as previously described.2 (link) Shortly, frozen PBMC aliquots were quickly thawed, and washed using an automatic cell washer. Following primary wash step, cell viability and cell numbers were analyzed using Vi cell counter. PBMC staining was performed with CD3-QDot605 and CD45RA-PacificBlue (both Invitrogen), CD4-AlexaFluor700, CD8-APC-H7, CCR7-PE/Cy7, CD27-APC, and CD28-PerCp/Cy5.5 (all BD Biosciences). Following three wash steps, LIVE/DEAD® Fixable Aqua Dead Cell Stain (Thermo Fisher Scientific, Waltham, MA, USA) was added to allow discrimination of viable and dead cells. Samples were measured on a BD LSR II cytometer using BD FACSDiva acquisition software. At least 100,000 viable cell events per sample were acquired. The gating scheme is depicted in Fig. 2a.
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2

SARS-CoV-2-Specific T Cell Activation

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We analyzed the cell composition of the T cells specifically activated by SARS-CoV-2 in the IFN-γ assay by subtracting the basal cytokine response from the background control. We stained the cell surface for 20 min at 4°C using the following fluorochrome-conjugated antibodies titrated to their optimal concentrations: CD45RA FITC (BD Pharmingen), CD27 APC (BD Pharmingen), CD3 VioGreen (Miltenyi Biotec), CD4 PECy7 (BD Pharmingen), CD8 APC Cy7 (BD Pharmingen), and 7AAD (BD Horizon). For the Treg panel CD25 BV421 (BD Horizon) and CD127 PE-CF594 (BD Horizon), were used. For the activation panel, HLA-DR BV 421 (BD Pharmingen), CD69 BV421 (Biolegend), and CD25 BV421 (BD Horizon), were used. For the exhaustion panel PD1 AF700 (Biolegend) and NKG2A BV421 (Biolegend) were used. For the chemokine panel, CD103 BV421 (BD Horizon) and CCR7 PE-CF594 (BD Horizon) were used. Cell acquisition was performed using a Navios cytometer (Beckman Coulter), acquiring an average of 200,000 cells. The analysis was performed using FlowJo 10.7.1 (FlowJo LLC).
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3

Multiparameter Flow Cytometry of B Cell Subsets

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All flow cytometry used appropriate isotype controls. Gating and compensation were aided by the performing fluorescence minus one controls. Cells isolated from biopsies or blood were stained with blue-fluorescent reactive dye (Life Technologies), CD19-BV785, CD27-APC (BD Biosciences) or PE or BV421, CD10-BV605 or APC, CD38-PerCp-ef710 (eBioscience), CD24-PE/Cy7 or BV605, IgD-APC/Cy7, IgM-V450 (BD Biosciences), IgG-PE/Cy7 and IgA-FITC (Miltenyi Biotec), in 2% FCS staining buffer with 1 mM EDTA for 15 min at 4 °C before analysis on the BD LSRFortessa (BD Biosciences). For high-throughput sequencing analysis, cells were stained with LIVE/DEAD Fixable Aqua (Life Technologies) or DAPI, CD19-BV785, CD27-FITC or APC, IgD-APC/Cy7, CD38-PerCp-ef710 (eBiosciences), CD10-BV605 in 2% FCS staining buffer with 1 mM EDTA for 15 min at 4 °C before sorted on the BD FACSAria (BD Biosciences). Four subsets from PBMC and three subsets from paired biopsy mononuclear cells from Donors 1 to 4. The numbers of cells used to generate sequences for each sample from Donors 1 to 4 are shown in Supplementary Fig. 14d.
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4

Multiparametric Flow Cytometry Analysis

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For reference, see Stepensky et al. (2013) (link). Additional antibodies used in the study were TCR αβ FITC, CD3 APC, CD16/CD56 PE, CD8 AF700, CD45RA PE, CD38 Pacific Blue, CD20 PerCp, IgG APC, kappa FITC, lambda PE, CD21 FITC, CD8 PE, and TCR γδ PE (Beckman Coulter GmbH); CD45RA APC-Cy7 and IL-2 PerCpCy5.5 (BioLegend Inc.); CD27 FITC, CD27 APC, CD27 BV605, CD27 PerCpCy5.5, CD38 APC, CD19 APC, IgG PE, S6(pS235/236) APC (BD Biosciences), and IgM AF488 (Jackson); and BclXL AF488 (Cell Signaling Technologies).
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5

Sorting Thawed PBMC Subpopulations

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Thawed PBMCs were viability stained and then surface stained for 30 min with fluorescently labeled antibodies against CD3 APC-H7, CD4 Alexa Fluor 680, CXCR5 Biotin, CD19 PE, CD20 V450, CD27 APC (all BD) CD45RO (Beckman Coulter), PD1, and ICOS (BioLegend) for 30 min on ice, followed by a secondary staining step with Streptavidin-PECy5 (BioLegend). After washing, only single, live lymphocytes were sorted on a FACSAria II into high-purity populations, dependent on their unique surface marker expression profile. Each sample was rerun to control for purity.
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6

Lymphocyte Subsets Quantification

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Patients' blood was collected in EDTA tubes (BD Biosciences) at 6 time points: pre-, 15, 30, 90 min and 24 h post reperfusion as well as 3 months after the acute event. Whole blood samples were used for quantification of absolute counts and percentage distribution of lymphocyte subpopulations by multicolor flow cytometry. Absolute counts of granulocytes, monocytes, CD4+ and CD8+ T lymphocytes were measured using the BD MultiTEST cocktail (anti-CD3-FITC, CD8-PE, CD45-PerCP, CD4-APC) and BD Trucount tubes (BD Biosciences). NK and NKT-like cells as well as naïve (CCR7+CD45RA+), central memory (CCR7+CD45RA), effector memory (CCR7CD45RA) and terminally differentiated effector memory (CCR7CD45RA+) subpopulations of CD4+ and CD8+ T lymphocytes were identified with the following monoclonal antibodies: anti-CD3-FITC, CD4-V500, CD8-APC-H7, CD16-PE, CD27-APC, CCR7(CD197)-PE-Cy7 (BD Biosciences), CD45RA-Pacific Blue (Invitrogen) and CD56-PerCP-eFluor710 (eBioscience, San Diego, CA, USA). Following incubation with these antibodies, samples were lysed, washed and immediately analyzed on a flow cytometer.
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7

Flow Cytometry of SARS-CoV-2 Trimer-Specific B Cells

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Flow cytometry of PBMCs from one healthy donor with five times of vaccinations were conducted following methods described previously47 (link). All collections were conducted according to the guidelines of the Declaration of Helsinki and approved by the Institutional Review Board of the Ethics Committee of Huashan Hospital (2021-749). This participant provided written informed consent. Briefly, PBMCs were stained with LIVE/DEAD Fixable Yellow Dead Cell Stain Kit (Invitrogen) at ambient temperature for 20 min, followed by washing with RPMI-1640 complete medium and incubation with 10 μg/mL SARS-CoV-2 Omicron BA.1- and MERS-CoV-S trimers with His tag at 4 °C for 1 h. Afterward, the cells were washed again and incubated with a cocktail of flow cytometry antibodies, containing CD3 APC-H7 (BD Biosciences), CD19 BV421 (BD Biosciences), CD27 APC (BD Biosciences), and anti-His PE (Biolegend), at 4 °C for 1 h. Stained cells were then washed, resuspended in RPMI-1640 complete medium and sorted for S trimer-specific memory B cells (CD3CD19+CD27+S trimer+ live single lymphocytes). The sorted cells were loaded into the BD Rhapsody single-cell analysis platform, which could effectively capture and separate single cells. The BCR library preparation and quality control were performed according to the manufacturer’s protocol and sequenced on the NovaSeq PE150 platform (Illumina).
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8

Phenotypic Analysis of PBMC Tetramer-Enriched Cells

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PBMCs from Tx101 at d87 post transplant were thawed and rested overnight before incubating with anti-human FcR block (Miltenyi Biotec, Bergisch Gladbach, Germany) for 15 min on ice. Cells were stained with A2-GLC-tetramer-PE, washed, incubated with anti-PE microbeads (Miltenyi Biotec) before passing through LS columns (Miltenyi Biotec) to enrich for tetramer-stained cells.24 (link), 35 (link) Cells were stained with surface antibodies mentioned above, as well as CD45RA-FITC (#555488) and CD27-APC (#558664) (both from BD Biosciences) or CD27-AF700 (#56-0279-42, eBioscience, San Diego, CA, USA) for phenotypic analysis, and then single-cell sorted for TCRαβ analysis.
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9

Multicolor Flow Cytometry of PBMCs

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Fresh PBMCs were prepared and stained on ice for 30 min as previously described [27 (link)], using the following pretitrated antibodies: CD3-phycoerythrin (PE), CD4-PerCP, CD8-allophycocyanin (APC), CD27-APC, CD45-RA-PE, CD38-PE, and HLA-DR-fluorescein (FITC) (BD Biosciences, San Jose, California, USA), Cells were acquired on a FACSCalibur (BD Biosciences) and analyzed using FlowJo software, version 8.8 (Tree Star Inc., Ashland, Oregon, USA). Cryopreserved PBMCs (>90% viability) were rested for 24 h in supplemented RPMI-1640 medium [(10% human serum, penicillin/ streptomycin (Invitrogen), 2 mmol/l l-glutamine (Invitrogen, Carlsbad, California, USA)] prior to staining.
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10

Characterization of B-cell and T-cell subsets

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In separate experiments, CFSE-labeled PBMCs were resuspended in a culture medium and incubated with saturating concentrations of dye-conjugated mAbs for 30 min at 4°C. Naïve (CD20+CD19+IgD+CD27), non-switched (CD20+CD19+IgD+CD27+), and memory (CD20+CD19+IgDCD27+) B-cell populations and non–B-cell populations (CD19) were isolated by FACS with a FACSAria II (BD Biosciences) dependent on the experiment. In addition, from the non–B-cell fraction, total CD3+ T cells (CD3+CD19) were isolated for specific experiments. The following mAbs were used for isolation: CD3 PE (347247; BD Biosciences), CD19 APC-R700 (564977; BD Biosciences), CD27 APC (337169; BD Biosciences), and IgD PE (555779; BD Biosciences). Different combinations, at a fixed number of cells (25,000 B cells with 125,000 non-B cells) or 100,000 T cells, were then cultured in 96-well U-bottom plates for 6 d. During culture, the cells were stimulated with CpG or αCD40 + IL-21 with or without concentrations of daratumumab as described above. T cells were stimulated with anti-CD3 (αCD3) (clone 1xE; Sanquin) and 10 μg/ml anti-CD28 (αCD28) (clone 15E8; Sanquin) with or without daratumumab. After 6 d, cells were analyzed by flow cytometry as described above. Supernatants were collected for further analysis.
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