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27 protocols using ab187027

1

Western Blot Analysis of TGR5 Signaling

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An anti-GPCR TGR5 (ab72608 rabbit polyclonal antibody (pAb)) antibody was purchased from Abcam (Biochiefdom International, New Taipei City, Taiwan). Antibodies against RhoA (ab187027 rabbit monoclonal antibody (mAb)), ROCK1 (ab45171 rabbit mAb), matrix metalloproteinase 2 (MMP2; ab37150 rabbit pAb), and MMP9 (ab38898 rabbit pAb) were also purchased from Abcam, Cambridge, United Kingdom. Anti-phospho-Janus kinase 2 (JAK2; Tyr1007/1008: #3771 rabbit mAb), anti-JAK2 (D2E12: #3230 rabbit mAb), anti-phospho-signal transducer and activator of transcription 3 (STAT3; Tyr705; D3A7: #9145 rabbit mAb), anti-phospho-STAT3 (Ser727; D4X3C: #34911 rabbit mAb), and anti-STAT3 (D3Z2G: #12640 rabbit mAb) were purchased from Cell Signaling Technology (CST, Beverly, MA, USA), and the β-actin (C4: sc-47778) antibody was purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Alexa Fluor 647 donkey anti-rabbit immunoglobulin G (IgG) and Alexa Fluor 488 donkey anti-rabbit IgG were purchased from Invitrogen (Grand Island, NY, USA).
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2

Western Blot Analysis of Collagen and Cytoskeletal Proteins

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Cells were lysed in RIPA buffer (150 μL/cm3) prior to SDS-PAGE electrophoresis. The proteins were transferred from the gel to methanol-activated PVDF membranes at 110 V for 2 h. The membranes were washed twice with 1X TBST and then incubated with 5% non-fat milk for 1 h at room temperature in order to block nonspecific binding. Next, they were incubated with primary antibodies overnight at 4 °C. The primary antibodies used were as follows: anti-collagen I (ab138492, Abcam), anti-GAPDH (ab181602, Abcam), anti-alpha smooth muscle actin (ab124964, Abcam), anti-LAMB3 (TD2381S, Abmart), anti-RhoA (ab187027, abcam), anti-MYL9 (ab191393, Abcam) and anti-ROCK1 (ab134181, Abcam). After washing, the blotted membranes were then incubated with the appropriate secondary antibodies conjugated to horseradish peroxidase. The protein bands were then visualized by using an enhanced chemiluminescence detection system (ECL Substrate Kit, Abcam).
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3

Western Blot Analysis of Protein Signaling

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Protein samples were collected from cell lysates. Protein was loaded onto 10% sodium dodecyl sulfate-polyacrylamide gel (SDS-PAGE), and then were transferred to polyvinylidene fluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA). At room temperature, these membranes were blocked in PBS containing 5% nonfat milk for 1 h, and then incubated with primary antibodies overnight at 4°C. The following were the primary antibodies in this research: anti-MEX3A (dilution: 1:500, Abcam, UK, ab79046), anti-RhoA (dilution: 1: 500, Abcam, UK, ab187027), anti-ROCK1 (dilution: 1:1000, Abcam, UK, ab134181), anti-LIMK1 (dilution: 1:500, Abcam, UK, ab81046), anti-β-actin (dilution: 1:1000, Abcam, UK, ab8226), anti-RhoA (phospho S188) (dilution: 1:1000, Abcam, UK, ab41435), anti-phospho-ROCK1 (Tyr913) (dilution: 1:1000, Invitrogen, USA, PA5-105054) and anti-phospho-LIMK1 (Thr508) (dilution: 1:1000, Invitrogen, USA, PA5-104925). After being washed with TBST, these membranes were incubated with secondary antibody at 25°C for 1 h. Protein blots were visualized using enhanced chemiluminescence (Millipore, USA) [14 ].
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4

Western Blot Analysis of Cellular Proteins

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Total protein samples were extracted from cell samples with RIPA buffer (CWBio, Beijing, China) and protein concentration was measured using BCA protein assay kit (Beyotime, Shanghai, China). Equal amount of protein sample was separated on 12% SDS-PAGE gels followed by transferred to nitrocellulose membranes. Then, the membranes were blocked in 5% non-fat milk dissolved in TBST solution and incubated with primary antibodies against p300 (Abcam, Cambridge, MA, USA; ab275378, 1:1000 diluted), RhoA (ab187027, 1:2000 diluted), ROCK (ab134181, 1:1000 diluted), NF-κB p65(ab207297, 1:1000 diluted), HDAC1 (ab109411, 1:4000 diluted), COL1A1 (ab270993, 1:3000 diluted), COL2A1 (ab34712, 1:3000 diluted), and GAPDH (ab8245, 1:5000 diluted) overnight at 4°C. After washing with TBST, membranes were incubated with HRP-conjugated secondary antibodies for 2 h. The protein bands were visualized using an enhanced chemiluminescence reagent (Pierce Biotech, Inc., Rockford, IL, USA).
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5

Profiling of VEGF Signaling Pathway

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RIPA lysis buffer supplemented with phosphatase and proteinase inhibitor (Roche, Basel, Switzerland) was used for protein extraction. Protein from cell lysates or tissues was separated on SDS-PAGE gel and transferred onto PVDF membrane (Merck Millipore, # IPVH00010). Western blot analysis was then performed using primary antibodies against VEGF165 (1:1,000, CST, #50661), VEGFR2 (1:1,000, CST, #9698), phospho-VEGFR2 (1:1,000, Tyr1175, CST, #2478), phospho-STAT3 (1:1,000, Tyr705, Abcam, #ab267373), STAT3 (1:2,000, Abcam, #ab68153), ERK (1:3,000, Abcam, #ab184699), phospho-ERK (1:1,000, Thr202/204, CST, #4370), RhoA (1:5,000, Abcam, #ab187027), phosphor-AKT (1:1,000, ser473, CST, #4060), AKT (1:1,000, CST, #9272), Cyclin D1(1:200, Abcam, #ab16663) and RhoA (1:5,000, Abcam, #ab187027). Secondary antibodies were employed to visualize the immunoblots. Image J software was utilized to quantitatively analyze protein expression.
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6

Fibrosis Signaling Pathway Profiling

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Fibroblasts lysates were subjected to WB analysis to survey changes to their Col I, GEF-H1, p-GEF-H1, and α-SMA under different circumstances. As the landmark molecules of fibrosis and ROCK signaling, Col I, GEF-H1, p-GEF-H1, and α-SMA were separated from the lysates, transferred to PVDF film, and determined by chemiluminescence. The employed antibodies included rabbit anti-α-Tubulin antibody (Proteintech, China, 11224-1-AP), rabbit anti-Collagen I antibody (Proteintech, China, 14795-1-AP), rabbit monoclonal [E184] to alpha smooth muscle Actin antibody (Abcam, UK, ab32575), mouse monoclonal [1A4] to alpha smooth muscle Actin antibody(Abcam, UK, ab7817), rabbit monoclonal [EPR18134] to RhoA antibody (Abcam, UK, ab187027), rabbit monoclonal [EPR17963] to GEF H1-C-terminal antibody (Abcam, UK, ab201687), and rabbit monoclonal to Phospho-GEF-H1 (Ser886) antibody (CST, USA, 14143).
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7

Rho GTPase Activation Assay

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After reaching 80% density of endothelial cells in the umbilical vein, we administered a drug stimulation for 30 min and then detected the CN-Patch activation of Rho GTPase through a pull-down technique. The protein extraction and quantification were the same as mentioned above. Active RhoA and Active CDC42 were measured using a pull-down assay kit from Cytoskeleton (16118, ThermoFisher, USA). The concentration of the primary antibody as RhoA (catalog number: ab187027, clone: EPR18134, Abcam) was 1:1000, and the CDC42 (catalog number: ab187643, clone: EPR15620, Abcam) antibody concentration was 1:10000. Following overnight incubation at 4 °C, the blots were washed in TBST (WB20500, NCM, China) and then incubated with IRDye® 800CW secondary antibodies in fresh blocking buffer for 1 hour at room temperature. Afterward, the blots were washed again in TBST. The images of the immunoblots were quantified using Image J software 1.8.0, and the relative levels of the target proteins were normalized by β-actin (dilution of 1:50000, catalog number: AC026, clone: ARC51105-01, ABclonal).
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8

Western Blot Analysis of RhoA Signaling

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Radio-Immunoprecipitation assay cell lysis buffer (Amresco Inc., Texus, USA) was used to collect total protein. In brief, single cell suspension was centrifuged at 800 g at 4 °C for 5 min with the supernatant discarded. Then the cells were ice-bated in a fivefold volume of lysis buffer for 10 min, and then centrifuged at 12,000 g at 4 °C for 10 min to collect the supernatant. The collected protein was run on SDS-PAGE and transferred to polyvinylidene fluoride membranes (EMD Millipore). Subsequently, the membranes were blocked with 5% skimmed milk and then incubated with the primary antibodies against RhoA (1:5000, ab187027), p-RhoA (1:1000, ab41435), ROCK2 (1:5000, ab71598) and β-actin (1:1000, ab8227) (Abcam Inc., Cambridge, MA, USA) at 4 °C for 16 h, and then with the secondary antibody (1:3000, ab205718) at room temperature for 2 h. The immunoblotting image were visualized using the Image J software (Version 1.8.0, National Institute of Health, USA). Three independent experiments were performed.
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9

Immunoblotting Antibody Panel Protocol

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The following antibodies were used for immunoblotting: anti-LC3 (L8918, Sigma-Aldrich), anti-paxillin (ab32084, Abcam), anti-Atg5 (#12994, Cell Signaling), anti-Atg7 (A2856, Sigma-Aldrich), anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH; ab181602, Abcam), anti-FAK-pY397 (44-624G, ThermoFisher Scientific), anti-FAK (610087, BD Transduction Laboratories), anti-Src-pY416 (#2101, Cell Signaling), anti-Src (#2109, Cell Signaling), anti-RhoA (ab187027, Abcam), and anti-β-actin (ab8227, Abcam).
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10

Quantification of FAK and H3K9 Modifications

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To quantify the expressions of FAK, H3K9 di- and tri-methylation, cells were lysed with RIPA lysis buffer (Beyotime). 20 μl of each sample was separated by 8–15% SDS-PAGE, blocked with 5% BSA overnight at 4 °C and incubated with primary antibodies to FAK (Rabbit, 1:1000, Abcam, ab40794), FAK-Y397 (Rabbit, 1:1000, Abcam, ab81298), H3K9 di-methylation (Rabbit, 1:300, Millipore, 17-648) and tri-methylation (Rabbit, 1:300, Millipore, 17-625), Histone H3 (Rabbit, 1:500, CST, #D1H2), RhoA (Rabbit, 1:500, Abcam, ab187027), and GAPDH (Mouse, 1:1000, Abcam, ab8245). Primary antibodies were detected with goat anti-Rabbit IgG-HRP (1:2000, Santa Cruz, sc-2004) or anti-Mouse IgG-HRP (1:2000, Santa Cruz, sc-2005). The blots were developed using SuperSignal West Pico chemiluminescent substrate (Millipore).
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