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6 protocols using anti crbn

1

Characterizing CRBN-mediated Protein Degradation

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The following antibodies were used: anti-FLAG (Sigma, F7425), anti-IKZF3 (Cell Signaling, #15103), anti-IKZF1 (Cell Signaling, #9034), anti-RUNX1 (Abcam, ab92336), anti-RUNX3 (Cell Signaling, #9647), anti-CBFβ (Santa Cruz, sc-20693), anti-CRBN (Sigma, HPA045910), anti-ubiquitin (K48) (EMD Millipore, #05–1307), anti-TUBULIN (Santa Cruz, sc-8035), anti-VINCULIN (Santa Cruz, sc-73614), anti-Rabbit IgG-HRP (GE Healthcare, NA934V), and anti-mouse IgG-HRP (GE Healthcare, NA931V). The following agarose beads were used: anti-FLAG M2 Affinity Gel (Sigma, A2220) and Glutathione Sepharose 4B (GE Healthcare, #17075601). The following in vitro translation kit was used: TNT T7 Coupled Reticulocyte Lysate Systems (Promega, L4610). Benzonase was used according to manufacturer (Sigma, E1014). The following compounds were used: Lenalidomide (Sigma, CDS022536), Pomalidomide (Sigma, P0018), Bortezomib (Millennium Pharmaceuticals), and AI-10–104 was kindly provided by Dr. John H. Bushweller.
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2

Molecular Mechanisms of CRAC Channel Regulation

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All plasmids used in this study were sequenced to confirm their identity. Crbn, Ampk, Slo, or HA-Ubiquitin constructs used in this study were described previously26 (link). Orai1 (MMM1013-202764440), Orai2 (MMM1013-202859855), and Orai3 (MMM1013-202842392) cDNA were purchased from Open Biosystems to construct expression vectors by a PCR-based strategy. Glutamine synthetase (GS) cDNA were synthesized from mRNA of the testis of mice and GS expression vectors were generated. The complete list of all primer sequences used in the study is provided as a Supplementary table. Anti-Flag (Sigma, F1804), anti-HA (Santa Cruz, sc-7392), anti-GST (Santa Cruz, sc-138), anti-Crbn (Sigma, HPA045910), anti-Orai1 (Santa Cruz, sc-68895), anti-Orai1 (Alomone labs, ACC-062), anti-Orai2 (Abcam, ab180146), anti-Ampkα (Cell signaling, #2532), anti-phospho-AMPKα (cell signaling, #2535), anti-Stim1 (Abcam, ab108994), anti-Cul4A (Abcam, ab92554), anti-DDB1 (Bethyl Laboratories, A300-462A), anti-phospho-raptor (Cell signaling, #2083), anti-raptor (Cell signaling, #2280), anti-phospho-S6K (Cell signaling, #9206), anti-S6K (Cell signaling, #9202), anti-Lamin B (Santa Cruz, sc-374015), anti-Erk2 (Santa Cruz, sc-154), anti-CD16/32 (BioLegend, #101302), anti-CD11b (BioLegend, #1010207), and anti-β-Actin (Santa Cruz, sc-1616) were purchased.
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3

Western Blot Analysis of Protein Expression

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Proteins were extracted with lysis buffer (50 mM HEPES, 100 mM NaF, 10 mM EDTA, 50 mM Na pyrophosphate, 1% Triton at pH 7.4, and 10 mM Na Orthovanadate) for 15 min at 4 °C as previously reported [17 (link)]. The total protein samples (25 µg) were subjected to 9% SDS PAGE, transferred onto an activated polyvinylidene difluoride membrane (Immobilon P, Millipore, Denmark), and incubated overnight at 4 °C with primary antibodies followed by peroxidase-conjugated secondary antibodies. The signal was detected by Super Signal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific, San Jose, CA, USA). Images were obtained using a densitometer (Bio-Rad Laboratories, Hercules, CA, USA) and resolved quantitatively. Each band level was standardized with respect to the β-actin control. Anti-asprosin (AdipoGen, Seoul, Korea), anti-PKA, anti-GLUT4, anti-SOD1, anti-SOD2, anti-β-actin antibodies (Santa Cruz, CA, USA), anti-CRBN (Sigma-Aldrich, Louis, MO, USA), anti-AMPK, anti-Akt, anti-p38MAPK, anti-TGF-β (Cell Signaling Technology, Beverly, MA, USA), anti-FNDC5, anti-PGC-1α, and anti-UCP3 antibody (Abcam, Cambridge, MA, USA) were used.
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4

Western Blotting for Protein Analysis

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Proteins were separated by SDS-PAGE and transferred to polyvinylidene fluoride (PVDF) membranes. After blocking with 3% BSA in TBS-T (137 mM NaCl, 20 mM Tris-Cl, pH 7.6, and 0.1% Tween 20), membranes were incubated with various primary antibodies, including rabbit polyclonal anti-CRBN (Sigma, Darmstadt, Germany, HPA045910, 1:2000), mouse monoclonal anti-AMPK α (Invitrogen, Waltham, MA, USA, AOH1332, 1:1000), rabbit polyclonal anti-AMPK β (Cell Signaling, Danvers, MA, USA, 4150, 1:1,000), rabbit polyclonal anti-AMPK γ1 (Abcam, Cambridge, UK, ab32508, 1:1000), rabbit polyclonal anti-β-actin (Sigma, A2066, 1:5000), rabbit polyclonal anti-GAPDH (Abfrontier, Seoul, Korea, LF-PA0018, 1:5000), mouse monoclonal anti-Myc (Cell Signaling, 2276, 1:2500), and mouse monoclonal anti-HA (Cell Signaling, 2367, 1:2000). The blots were then incubated with horseradish peroxidase (HRP)-conjugated anti-rabbit or mouse secondary antibody (Jackson ImmunoResearch, West Grove, PA, USA, 111-035-003 or 115-035-008, 1:10,000) and developed using enhanced chemiluminescence detection (ECL; Cytiva, Marlborough, MA, USA).
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5

Protein Interaction Assay with Compounds

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bortezomib (S1013), lenalidomide (S1029), pomalidomide (S1567), and MLN4924 (S7109) were purchased from Selleck Chem; all were dissolved in DMSO. Anti-Flag (F3165; Sigma-Aldrich), anti-HA (H6908; H3663; Sigma- Aldrich), anti-Myc (2272; Cell Signaling Technology), anti- Cul1 (AP16324b; Abgent), anti-β-actin (5779–1; Epi- tomics), anti-actin (1844–1; Epitomics), anti-TRIP15 (ab155774; Abcam), anti-CSN6 (NBP1–79752), anti-JAB1 (ab182756; Abcam), anti-CSN7B (ab133548; Abcam), anti- CSN7A (AP12810b; Abgent), anti-CSN8 (AP14987a; Abgent), anti-Fbxo7 (ab57037; Abcam), anti-IKZF3 (ab139408; Abcam), anti-IKZF1 (sc-13039; Santa Cruz), anti-Nedd8 (ab81264; Abcam), anti-HA agarose (E6779; Sigma-Aldrich), anti-Myc agarose (E6654; Sigma-Aldrich), and anti-CRBN (SAB045910; Sigma-Aldrich) were purchased and used according to the manufacturers’ recommendations. Secondary antibodies included goat anti-mouse IgG-HRP (sc-2005; Santa Cruz) and Goat anti-rabbit IgG- HRP (sc-2004; Santa Cruz).
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6

Immunoprecipitation Assay for E3 Ligase Complexes

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The following antibodies were used: anti-FLAG (Sigma, F7425), anti-IKZF3 (Cell Signaling, #15103), anti-IKZF1 (Cell Signaling, #9034), anti-RUNX1 (Abcam, ab92336), anti-RUNX3 (Cell Signaling, #9647), anti-CBFβ (Santa Cruz, sc-20693), anti-CRBN (Sigma, HPA045910), anti-ubiquitin (K48) (EMD Millipore, #05-1307), anti-TUBULIN (Santa Cruz, sc-8035), anti-VINCULIN (Santa Cruz, sc-73614), anti-Rabbit IgG-HRP (GE Healthcare, NA934V), and anti-mouse IgG-HRP (GE Healthcare, NA931V). The following agarose beads were used: anti-FLAG M2 Affinity Gel (Sigma, A2220) and Glutathione Sepharose 4B (GE Healthcare, #17075601). The following in vitro translation kit was used: TNT T7 Coupled Reticulocyte Lysate Systems (Promega, L4610). Benzonase was used according to manufacturer (Sigma, E1014). The following compounds were used: Lenalidomide (Sigma, CDS022536), Pomalidomide (Sigma, P0018), Bortezomib (Millennium Pharmaceuticals), and AI-10-104 was kindly provided by Dr. John H. Bushweller.
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