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5 protocols using ep1454y

1

Immunohistochemical Evaluation of MET in ESCC

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Freshly cut 4-μm sections of each paraffin block of 22 ESCC samples and 19 NTST were used to perform immunohistochemistry using primary antibody against MET (EP1454Y, Abcam®, USA). Antigen retrieval was performed in a water bath while slides were submerged in citrate buffer, pH 6.0, for 40 min at 98°C. The detection was performed following the supplier's recommendations for Novolink™ Max Polymer Detection System (Leica, UK). Samples from lung adenocarcinoma were used as a positive control of MET expression. In the negative control, the primary antibody was replaced with the antibody diluent solution.
Digital images were captured using the Aperio ScanScope CS Slide Scanner (Aperio Technologies, USA) under 20× objective magnification (0.5 μm resolution). An expert pathologist selected the tumor areas using ImageScope software suite (Aperio Technologies). The digital image analysis was performed on whole slide images with Aperio Membrane V9 algorithms (Aperio Technologies). The quantification was done automatically, after algorithm calibration by an experienced observer, and results are reported for MET immunohistochemistry (IHC) as scores from 0 to 3+, and positive tumor cell was defined at the membrane completeness between scores 1 to 3.
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2

Western Blot Analysis of c-Met Protein

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Whole cells were washed with cold PBS and lysed in RIPA buffer. Equal amounts of total protein (30 μg) from cell lysates were loaded onto 10% SDS/PAGE gels, transferred to PVDF membranes (Millipore), and detected using an ECL Western Blotting Detection System (Bio-Rad). The antibodies used were c-Met (1:2000 dilution, EP1454Y, Abcam) and GAPDH (1:5000 dilution, Proteintech).
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3

Immunofluorescence Imaging of Met Receptor in NP-Treated HepG2 Cells

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HepG2 cells were plated in a cell view cell culture dish (Greiner Bio-One North America, Inc., Monroe, NC, USA) at a density of 2.5 × 104 cells/compartment and incubated for 24 h. Next, the cells were exposed to NPs at a concentration of 50 μg ml–1 and incubated for an additional 24 h, after which the cells were washed twice to remove excess NPs and then fixed with 4% paraformaldehyde (PFA) for 10 min. Subsequently, the cells were blocked with 1% bovine serum albumin (BSA)/10% normal goat serum/0.3 M glycine in PBS for 1 h, followed by washing three times (5 min each). Immediately after washing, the cells were incubated with anti–Met hepatocyte growth factor receptor (HGFR) antibody (1/100 dilution, EP1454Y, Abcam, Cambridge, MA, USA) for 1 h at room temperature (RT) and then goat anti-rabbit IgG H&L (1/200 dilution, DyLight® 488, ab96883, Abcam) in the dark for 1 h at RT. Both incubations were followed by washing three times (5 min each) with PBS. Confocal microscopy was performed using a confocal laser-scanning microscope (LSM510 META, Carl Zeiss Inc., Jena, Germany). All images were acquired using a 63 × 1.4 Plan-Apochromat oil immersion objective (Carl Zeiss).
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4

Investigating MET Signaling Modulation

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Cells were treated with MET antibody (Santa Cruz) on 24-well plates, cultured for additional 3 days with different concentrations of drugs, fixed, and washed 3 times. Crystal violet staining was performed after fixing of cells, followed by 5 times washing with water. For cell cycle assay, cells were transfected by plasmid containing vehicle or nMET (Addgene) as described above and subjected to fixation by 70% ethanol followed by protocol provided by the manufacture using Muse® Cell Cycle Assay Kit (Cat# MCH100106, Merck) with Muse cell analyzer and analysis (Merck).
For growing colonies in soft agar [29 (link)] in 6 well plates, cells were resuspended in 0.4% agarose top layer and seeded on 0.6% agarose base layer. The operation was under sterile conditions by mixing medium containing 20% FBS in 6-well plates and cells were grown for 3–4 weeks (37 °C, 5% CO2) with further feeding medium with or without membrane MET recognized antibody (Abcam, EP1454Y) for inhibiting mMET treatment. Finally, formed colonies were stained with Crystal Violet, or directly observed and counted under light microscope.
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5

Immunohistochemical Analysis of cMet in Mouse Colon

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Serial formalin-fixed sections of mouse colon were cut with 10 μm thickness and incubated overnight with 1:100 dilution of monoclonal rabbit anti-cMet antibody (EP1454Y, Abcam) at 4 °C. A 1:200 dilution of secondary goat anti-rabbit antibody (ab150077, Abcam) was applied. Controls were prepared using same method without primary anti-cMet antibody.
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