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5 protocols using tnfα neutralizing antibody

1

Immune Cell Profiling in Murine Cystitis

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To detect immune cell populations in the bladder, the bladders of mice with UPEC-induced cystitis were harvested and digested with 0.1 mg/ml type D collagenase (StemCell Technologies, Vancouver, BC, Canada) for 30 min at 37°C. The digested cell suspensions were filtered through a 70-μm cell strainer. Single cells were washed twice with PBS and stained with antibodies against: CD45 (APC-R700, Biolegend), F4/80 (BV-605, Biolegend), CD11b (APC-Cy7, Biolegend), CD64 (APC, Biolegend), and Ly6G (PE, Biolegend). The macrophage and neutrophil populations were detected using a flow cytometer (BD Canto, Franklin Lakes, NJ, USA). Data were analyzed using FlowJo X software (Tree Star, Ashland, OR, USA).
Following treatment with MB49-Exo/MB49-U-Exo (10 μg/mL) or a TNFα-neutralizing antibody (Cell Signaling Technology, MA, USA) at a concentration of 100 ng/mL for 12 h, the BMDMs were washed twice with PBS and detached using trypsin-EDTA. Apoptosis was evaluated using the Annexin V (FITC)/PI apoptosis detection kit (BioLegend) according to the manufacturer’s instruction. The population of Annexin V+ or PI+ cells was detected by flow cytometry. All Annexin V+ cells, irrespective of their PI expression were considered to be apoptotic.
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2

Differentiation of THP1 Cells to M1 Macrophages

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THP1 cells were differentiated to M1 polarised macrophages by 6 h treatment with 320 nM Phorbol 12-myristate 13-acetate (Sigma-Aldrich), followed by 18 h with 100 ng/mL Lipopolysaccharide (Sigma-Aldrich) and 20 ng/mL Interferon-γ. Conditioned media was collected after 24 h and incubated for 1 h with 100 ng/mL TNFα neutralizing antibody (Cell Signaling Technologies), where appropriate.
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3

Induction and Inhibition of Cell Death Pathways

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Recombinant human TNFα was purchased from Gibco/Life Technologies (catalog no. PHC3011). TNFα-neutralizing antibody was purchased from Cell Signaling (catalog no. 7321). Birinapant was purchased from Selleckchem (catalog no. S7015). ABT263 (Navitoclax) was purchased from Selleckchem (catalog no. S1001). Z-VAD-FMK was purchased from ApexBio (catalog no. A1902). Necrostatin-1 was purchased from BioVision (catalog no. 2263-1). FasL was purchased from Enzo Life Sciences (catalog no. ALX-522-001-C010).
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4

Cytokine Assay Protocol for Immune Cells

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Glutamine, penicillin-streptomycin-nystatin, phosphate buffered saline (PBS) Dulbecco’s Modified Eagle’s Medium (DMEM), Hanks’ Balanced Salts Solution (HBSS), fetal bovine serum (FBS), HEPES, sodium pyruvate, Dulbecco’s Modified Eagle’s/F12 (HAM) medium (DMEM/F12) were from Beth Ha-Emek, Biological Industries, Israel.
Sodium azide, trypan blue, p-nitrophenylphosphate, phenylmethylsulfonyl fluoride, leupeptin, benzamidine, aprotinin, DMSO, Tween 20, Tris, 4,6-diamidino-2-phenylindole (DAPI), bovine serum albumin (BSA), Trypsin-EDTA, dihyroethidium (DHE), lipopolysaccharide (LPS), Skim Milk Powder, Poly-L-lysine, horseradish peroxidase (HRP), 1,2-Dioleoyl-sn-glycerol, Triton X-100, β-mercaptoethanol, Percoll, non-essential amino-acids, Diphenyliodonium chloride (DPI) were from Sigma Israel, Rehovot, Israel. Fetal calf serum was from GE Healthcare Life Sciences HyClone Laboratories, Inc., Logan Utah, USA. ECL detection kit for the immunoblot analysis was from PerkinElmer, MA, USA. Pyrrophenone was from Cayman Chemical, Michigan, USA. TNF-α-neutralizing antibody and U0126 (MEK1/2 inhibitor) were from Cell Signaling Technology, Danvers, MA, USA. Interleukin (IL)-4, IL-10, TNF-α, IFN-γ were from PeproTech Asia, NJ, USA.
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5

Investigating Apoptosis and Necroptosis in Ovarian Cancer

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Human ovarian cancer cell lines SKOV3 and OVCAR3 were purchased from the American Type Culture Collection (ATCC) provided by Sparklebio. SKOV3 and OVCAR3 cells were maintained in RPMI medium 1640 (Gibco) supplemented with 10% fetal bovine serum (Gibco, Carlsbad, CA) and 1% penicillin/streptomycin. Cells were incubated in a 5% CO2 humidified incubator at 37 °C, and collected using 0.05% trypsin EDTA following the specified incubation period. The following primary antibodies were used: P62(#8025), phospho-H2AX(γ-H2AX;#9718), caspase-8(#9746), RIP1(#3493 s), Beclin1(3738 s), ATG7(#2631S), PARP (#9546S), caspase-3(#9665 s), cIAP1(#7065 s), cIAP2(3130 s), XIAP(#14334), FADD(#2782S), phospho-NF-κBp105/p50(4806S), NF-κB2p100/p52(#4882S), TNF-α (#6945s), TNF-α neutralizing antibody (7321s), and TNFR1(#3736S) were purchased from Cell Signaling Technology Inc.; GAPDH (#sc-47724) from Santa Cruz Biotechnology (SC); LC3 (#NB100–2220) from Novus Biologicals. Z-VAD-FMK (#V116) and Necrostatin-1(#N9037) were from Sigma. IKK-16(#S2882) from Selleck. The data were collected from at least three independent experiments.
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