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4 protocols using anti cyto c

1

Immunostaining of Cortical Neurons

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Cortical neurons were fixed with 4% paraformaldehyde and 4% sucrose at RT for 20 min, washed three times with PBS for 5 min each, permeabilized in 0.15% Triton X-100 for 15 min, and then incubated in blocking buffer (4% BSA and 3% normal goat serum) in PBS for 1 hr. Fixed neurons were next incubated with primary antibodies diluted in blocking buffer at 4°C overnight. Primary antibodies were as follows: rabbit anti-TOM20 (1:100, Santa Cruz), anti-myo6 (1:100, Sigma-Aldrich), anti-synaptophysin (1:400, Santa Cruz), and anti-SNPH (1:250); mouse anti-βIII-tubulin (1:5000, Sigma-Aldrich), anti-MAP2 (1:5000, BD Biosciences), anti-SV2 (1:2000, DSHB), anti-myo6 (1:50, Santa Cruz), and anti-cyto c (1:100, BD Biosciences). After washing three times with PBS at RT for 10 min each, samples were incubated with secondary fluorescent antibodies (Alexa 488, 546, 594 or 633 conjugated, Thermo Fisher Scientific) diluted in blocking buffer for 60 min, rewashed with PBS, and mounted with Fluoro-Gel mounting medium (Electron Microscopy Sciences) before imaging.
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2

Immunostaining of Cortical Neurons

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Cortical neurons were fixed with 4% paraformaldehyde and 4% sucrose at RT for 20 min, washed three times with PBS for 5 min each, permeabilized in 0.15% Triton X-100 for 15 min, and then incubated in blocking buffer (4% BSA and 3% normal goat serum) in PBS for 1 hr. Fixed neurons were next incubated with primary antibodies diluted in blocking buffer at 4°C overnight. Primary antibodies were as follows: rabbit anti-TOM20 (1:100, Santa Cruz), anti-myo6 (1:100, Sigma-Aldrich), anti-synaptophysin (1:400, Santa Cruz), and anti-SNPH (1:250); mouse anti-βIII-tubulin (1:5000, Sigma-Aldrich), anti-MAP2 (1:5000, BD Biosciences), anti-SV2 (1:2000, DSHB), anti-myo6 (1:50, Santa Cruz), and anti-cyto c (1:100, BD Biosciences). After washing three times with PBS at RT for 10 min each, samples were incubated with secondary fluorescent antibodies (Alexa 488, 546, 594 or 633 conjugated, Thermo Fisher Scientific) diluted in blocking buffer for 60 min, rewashed with PBS, and mounted with Fluoro-Gel mounting medium (Electron Microscopy Sciences) before imaging.
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3

Protein Extraction and Analysis from Brain Tissue

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Fresh brain tissue around the hematoma was removed, and protein extraction of both the cytosolic and mitochondrial fractions was performed using a multiple centrifugation method.23 (link) Briefly, the homogenized tissue was centrifuged at 750× g for 10 minutes at 4°C and then at 10,000× g for 20 minutes. The pellets were used to obtain the mitochondrial fraction. Then the supernatant was further centrifuged at 100,000× g for 60 minutes and was used for the cytosolic analysis. After the protein concentrations were determined, equal amounts of the samples were loaded, and the proteins were separated by 10%–20% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes. The primary antibodies were as follows: 1:1,000 anti-cleaved Cas-3 (9664, Cell Signaling Technology, Danvers, MA, USA); 1:1,000 anti-CytoC (556433; BD, Franklin Lakes, NJ, USA); and 1:5,000 anti-COX (A21348; Thermo Fisher Scientific, Waltham, MA, USA). After incubation with secondary antibodies, protein bands were detected and captured, and the intensities were quantified with the Quantity One version 16.0 software (Bio-Rad Laboratories Inc., Hercules, CA, USA).
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4

Western Blot Analysis of Apoptotic Proteins

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Intact cells or membrane fraction (pelleted by centrifuging permeabilized cell suspensions at 10,000 × g for 5 min) were lysed in cold radioimmunoprecipitation assay buffer, (150 mM NaCl, 1.0% (vol/vol) Octylphenoxypolyethoxyethanol, 0.5 % sodium deoxycholate, 0.1 % sodium dodecyl sulphate, and 50 mM Tris (pH 8.0; Sigma)), supplemented with 1 μg/ml protein inhibitors (leupeptin, antipain, and pepstatin) and 1 mM phenylmethylsulfonyl fluoride. Lysed samples and cytosol fractions were used for immunoblotting. Western blot was performed based on instructions of LI-COR (LI-COR Corporation, Nebraska, USA). Primary antibodies used were Anti-BAK (no. 06-536; Millipore) Anti-cyto c (no. 556433; BD Bioscience), Anti-HA (no. 9110; Abcam), Anti-mtHsp70 (no. MA3-028; Thermo Scientific), and Anti-prohibitin (no. ab28172; Abcam), anti-Bax (N-20, sc-493, SantaCruz), anti-MCL-1 (ADI-AAP-240, Enzo life sciences), anti-Bid (no. AF860, R&D systems), anti-Bim (no.2933, Cell Signaling), anti-Bcl-xL (no. 610211, BD transduction), anti-Actin (no.612656, BD transduction), anti-Calnexin (no. ADI-SPA-860, Enzo Life sciences). Detection of bands was performed on a LI-COR Odyssey scanner. ImageJ was used for quantification of the bands.
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