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27 protocols using rpmi 1640

1

K562 and C1R Cell Lines for NK Cell Stimulation

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K562 and C1R cell lines were obtained from ATCC (Manassas, VA, USA). The genetically modified clone of K562 cells expressing membrane-bound IL-21 (К562-mbIL21) was kindly provided by Dr Dean Lee (MD Anderson Cancer Center, USA). This clone is characterized as tCD19+CD64+CD86+CD137L+. All cell lines were cultivated in the following culture medium: RPMI-1640 (PanEco, Russia) supported with 10% FCS (fetal calf serum) (HyClone, USA), 2 mmol L−1 of l-glutamine (PanEco) and Antibiotic Antimycotic Solution (Sigma-Aldrich, St. Louis, MO, USA). Surface expression of IL-21 was tested periodically by flow cytometry. K562-mbIL21 cells and unmodified K562 cells were irradiated with γ radiation (100 Gy), cryopreserved at −150°C and then recovered prior to NK cell stimulation.
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2

Platelet Activation and Signaling Pathways

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The sources of the materials were as follows: calcium-sensitive cell-permeable fluorescent dye Fura-Red-AM, (Molecular Probes, Eugene, OR); LPS O111:B4, LPS O127:B8, ADP, PGI2, EGTA, HEPES, bovine serum albumin, apyrase grade VII, TRAP-6 (SFLLRN) (Sigma-Aldrich, St Louis, MO); CD62p-Alexa647, CD11b-FITC, CD66b-PE (Sony Biotechnology, San Jose, USA); HBSS, RPMI 1640, Ficoll (PanEco, Moscow, RF), MRS2179, Mes-AMP (Tocris Bioscience, UK); Cysteine-containing version of cross-linked collagen-related peptide (CRP) was kindly provided by Prof. R.W. Farndale (the University of Cambridge, Cambridge, UK). Tyrode’s buffer (150 mM NaCl, 2.7 mM KCl, 1 mM MgCl2, 2 mM CaCl2, 0.4 mM NaH2PO4, 0.4 mM Na2CO3, 5 mM HEPES, 5 mM glucose, 0.5% BSA, pH 7.35) was fresh made from reagents (Sigma-Aldrich, St Louis, MO). IBMX was a kind gift of prof. S.P. Gambaryan (SPBU, St. Petersburg, Russia).
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3

Antimicrobial Peptide MIC Assay

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Minimum inhibitory concentrations (MICs) were detected in a serial dilution assay with the purified compounds according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST) protocol [49 (link)]. Tests were carried out by taking a 100 mL stock solution of the peptide in a two-fold serial dilution at concentrations ranging from 0.5 to 64 mg/mL (0.1–12 µM) in DMSO (Merck, Darmstadt, Germany). The assays were conducted in 96-well microtiter plates (BioCell Technology, Irvine, CA, USA) in RPMI 1640 (PanEco, Moscow, Russia) medium without the addition of Na2CO3. Amphotericin B (AmB) was used as a positive control; the nutrient medium was used as a negative control. Each experiment was carried out in triplicate. MIC values were defined as the lowest concentration of compounds at which the microorganisms treated demonstrated no visible growth after 48 h of incubation. Assays were performed three times in triplicate
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4

Amniotic Fluid Karyotyping Protocol

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For karyotype analysis, 10–20 ml of amniotic fluid was obtained by amniocentesis. The amniotic fluid cells with 4.5 ml medium (RPMI-1640, Paneco, Russia) were cultured in a 37 °C incubator with 5% carbon dioxide. The cells were harvested at 10–12 days. After colchicine treatment for 2 h, the cells were digested using 1:250 trypsin, and incubated with 0.075 M KCl for 30 min. The prefixation, fixation, dropping, baking, and G-band staining were performed next. A total of 100 dividing phases were counted using an all-chromosome image analysis system based on the “An International System for Human Cytogenetic Nomenclature, ISCN2016”.
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5

Cytokine Activation in Spleen Cells

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In order to activate cytokines synthesis and secretion we cultivated 106/mL spleen cells in 1 mL of culture medium with concanavalin A (5 mkg/mL) for 20 hours at 37°C and 5% CO2 in 24-well cultured plates. The culture medium consists of RPMI-1640 (PanEco, Russia), 5% of inactivated fetal calf serum, 2 mM of glutamine, and 50 mkg/mL of gentamicin.
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6

Evaluating PBMC Viability in Culture

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The viability of human peripheral blood mononuclear cells was studied.
At first, 10 mL of blood was diluted 1:1 with PBS, layered on ficoll and centrifuged at 2000 rpm for 30 min. Thus, a layer containing mononuclear cells was obtained. Then, 5 mL of the buffy coat sample were washed twice with 10 mL of PBS, centrifuged at 1500 rpm for 5 min, and placed in a 12-well plate containing 2 × 106 cells/mL of RPMI-1640 (Paneco, Moscow, Russia). We added to this 10% fetal bovine serum (Paneco, Moscow, Russia), antibiotics (100 units/mL penicillin and 100 mg/mL streptomycin) and 2 mM L-glutamine at 37 °C in a 5% CO2 atmosphere. The studied samples were placed in a 12-well plate and incubated for 24 and 72 h. The viability of this product was then determined using the trypan blue dye exclusion method.
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7

Isolation and Activation of Splenic Cells

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For isolation of splenic cells, a piece of spleen was aseptically removed from each rat, placed in Potter homogenizer containing the Roswell Park Memorial Institute (RPMI)-1640 medium, and single-cell suspensions were prepared. The red blood cells were lysed with distilled water. To activate cytokine synthesis and secretion, we cultivated 106/mL spleen cells in 1 mL of culture medium with concanavalin A (5 µg/mL) for 20 hours at 37°C and 5% CO2 in 24-well cultured plates. The culture medium consisted of RPMI-1640 (PanEco, Moscow, Russia), 5% inactivated FBS, 2 mM glutamine, and 50 µg/mL gentamicin.42 The cell viability was determined according to trypan blue exclusion.
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8

Cell Culture Conditions and Maintenance

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Cell lines were obtained from Blokhin CRC cell collection. Cells were cultured in DMEM (for adhesion cell cultures) or RPMI-1640 (for suspension cell cultures) supplemented with L-glutamine (0.584 mg/mL), penicillin (50 U/mL) and streptomycin (50 μg/mL) (PanEco, Moscow, Russia) and 10% fetal bovine serum (PanEco, Russia). Cell lines were incubated at 37 °C in 5% CO2.
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9

Isolation and Activation of Rat Splenic Cells

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Isolation and cultivation of splenic cells were carried out as describe in10 (link). For isolation of splenic cells, a piece of spleen was aseptically remove from each rat, placed in Potter homogenizer containing the Roswell Park Memorial Institute (RPMI) 1,640 medium and single-cell suspensions were prepared. The red blood cells were lysed by distilled water. To activate cytokine synthesis and secretion, we cultivated 106/ml spleen cells in 1 ml of culture medium with concanavalin A (5 µg/ml) for 20 h at 37 °C and 5% CO2 in 24-well cultured plates. The culture medium consisted of RPMI-1640 (PanEco, Russia), 5% inactivated foetal bovine serum (FBS), 2 mM glutamine and 50 µg /ml gentamicin75 . The cell viability was determined according to trypan blue exclusion6 (link).
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10

Colorectal Cancer and Leukemia Cell Lines

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Human cancer cell lines of colorectal carcinoma HCT116 and Caco-2 were from ATCC (Washington, USA); cell lines of colorectal carcinoma HT-29 and T-lymphoblastic leukemia Jurkat were from the Institute of Cytology, Russian Academy of Sciences (St. Petersburg, Russia). Cell culture media (DMEM, RPMI1640), 0.05% trypsin-EDTA solution, and phosphate-buffered saline tablets were from PanEco (Russia). Fetal bovine serum was from HyClone (USA). WST1 was from Sigma-Aldrich (USA).
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