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8 protocols using mouse anti gapdh

1

Western Blotting Technique for Protein Analysis

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Western blotting was performed as previously described [54 (link)]. The samples were lysed in lysis buffer (1% Nonidet P-40, 0.5% sodium deoxycholate, 0.1% SDS, 1 mM EDTA, 1 mM EGTA, 150 mM NaCl, 10% glycerol, 1% Triton X-100, 100 mM NaF, 1 mM vanadate, and protease inhibitors) to lyse cells and fresh brain tissue. The primary antibodies used were: mouse anti-DCC (1:500, #554223, BD, San Jose, CA, USA ), mouse anti-His (1:1000, TA-02, ZSGB-BIO, Beijing, China), mouse anti-myc (1:1000, 22E8, Sungene Biotech, Tianjin, China), mouse anti-Netrin-1 (1:1000, ALX804838, Enzo Life Sciences, Farmingdale, New York, USA ), mouse anti-flag (1:1000, F3165, Sigma Aldrich, St Louis, MO, USA), rabbit anti-phospho-FAK(pTyr861) (1:1000, F9176, Sigma Aldrich, St Louis, MO, USA), rabbit anti-FAK (1:200, sc-557, Santa Cruz, Santa Cruz, CA, USA), rabbit anti-phospho-SRC (Tyr418)(1:1000, Invitrogen, Carlsbad, CA, USA), rabbit anti-SRC Family (1:1000, #2123, CST, Danvers, MA, USA), mouse anti-GAPDH (1:5000, TransGene Biotech, Beijing, China), mouse anti-beta actin (1:3000, A5441, Sigma Aldrich, St Louis, MO, USA), rabbit anti-phospho-ERK(Thr202/Tyr204) (1:1000, #9101, CST, Danvers, MA, USA), rabbit anti-ERK (1:1000, #4695, CST, Danvers, MA, USA), HRP-conjugated secondary antibody against mouse, goat or rabbit were purchased from Jackson ImmunoResearch (West Grove, PA, USA).
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2

Western Blot Analysis of Necroptosis Markers

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Cell lysates were separated on 10% SDS-PAGE gels and transferred onto nitrocellulose membranes. The membranes were blocked with 5% bovine serum albumin (BSA) and incubated with indicated primary antibodies at 4 °C for 12 h. After washing three times with TBS-T, membranes were incubated with secondary antibodies at RT for 1 h. ECL western blot substrate was used to visualize protein bands. Primary and secondary antibodies: rabbit anti-MLKL (Proteintech, 21066-1-AP), rabbit anti-p-MLKL (T357/S358) (Abcam, ab187091), rabbit anti-RIPK1 (CST, 8737), rabbit anti-RIPK3 (Abcam, ab72106), rabbit anti-ICAM1 (CST, 4915S), rabbit anti-VCAM1 (CST, 13662S), mouse anti-GAPDH (TransGen, HC301-02), mouse anti-Tubulin (TransGen, HC101-02), horseradish peroxidase (HRP) conjugated donkey anti-rabbit and HRP conjugated donkey anti-mouse were obtained from Jackson lab.
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3

Western Blot Analysis of PTPRD and STING

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Mice were deeply anesthetized with isoflurane and L4–L5 DRGs were dissected and placed in RIPA assay lysis buffer (C50008, Sangon Biotech). Protein concentration was measured using a bicinchoninic acid (BCA) assay (P0010, Beyotime Biotechnology, China). Proteins were separated by 10% SDS-PAGE and transferred onto PVDF membranes. PVDF membranes were blocked for 90 min at room temperature using 5% BSA in TBS-T and subsequently probed with the following primary antibodies at 4°C overnight: rabbit anti-PTPRD (1:1000, Novus, NBP2-94767), rabbit anti-STING (1:1000, CST, D2P2F), or mouse anti-GAPDH (1:1000, TransGen Biotech). The membranes were subsequently incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies (1:1000, Beyotime) for 120 min at room temperature. Finally, images were acquired using a GS800 Densitometer Scanner. The optical density of protein bands was quantified using ImageJ, with GAPDH used as the loading control to normalize protein expression levels. Each experiment was repeated three times.
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4

Western Blot Analysis of EMT Markers

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Total protein was harvested from HCC cells using RIPA lysis buffer, the BCA method was used to determine protein concentration. Forty micrograms of protein was loaded onto 8%-12% SDS-PAGE electrophoreses and transferred to polyvinylidene difluoride (PVDF) membranes. After blocking nonspecific binding by 2% Bovine Serum Albumin, the membranes were incubated overnight at 4 °C with primary antibody against CBX6 (1:1000, E-cadherin, 1:1000, rabbit anti- E-cadherin, Abcam, Cambridge, UK), β-catenin (1:2000, rabbit anti-β-catenin, Abcam, Cambridge, UK), N-cadherin (1:2000, rabbit anti-N-cadherin, Abcam, Cambridge, UK), Vimentin (1:2000, rabbit anti-Vimentin, Abcam, Cambridge, UK), snail (1:1000, rabbit anti-snail, Abcam, Cambridge, UK), zeb1 (1:1000, rabbit anti-zeb1, Abcam, Cambridge, UK), and GAPDH (1:4000, mouse anti-GAPDH, TransGene, Beijing, China). After washing with Tris-buffered saline with Tween20, the membranes were incubated with secondary antibody (1:4000, Abcam, Cambridge, UK) for 1 h at room temperature. The membranes were visualized using enhanced chemiluminescence (ECL) kit.
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5

Western Blot Analysis of Cell Signaling Pathways

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Western blotting was carried out according to the Bio-Rad general protocol (BIO-RAD Bulletin 6376 Rev A). Detailed protocol was previously described 17 (link). Primary antibodies were used as follow: rabbit anti-FOXG1 (Abcam, Cambridge, UK, ab18259, 1:1000); rabbit anti-caspase-9 (#9502, 1:1000), mouse anti-caspase-8 (#9746, 1:1000), rabbit anti-caspase-3 (#9665,1:1000), rabbit anti-cleaved caspase-3 (#9661, 1:1000), rabbit anti-AKT (#9272, 1:1000), mouse anti-ERK1/2 (#4696, 1:1000) and rabbit anti-c-Myc (#5605, 1:1000) were all from cell signaling (Danvers, MA, USA); Mouse anti-GAPDH was purchased from TransGen Biotech and mouse anti-α-tublin was get from Ray antibody Biotech (China).
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6

Western Blot Analysis of Inflammatory Proteins

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The cells were harvested and lysis in RIPA buffer supplemented with 1 mM PMSF, protease inhibitor and phosphatase inhibitor cocktail. The cell lysates were quantified using BCA protein assay kit and the Western Blot assays were carried out as previously described (Li et al., 2014 (link)). The following primary antibodies were used: mouse anti-GAPDH (1:4000, TransGen Biotech), mouse anti-β-Tubulin (1:4000, Proteintech Group, IL, United States), rabbit anti-COX-2 (1:1000, Proteintech), rabbit anti-iNOS (1:1000, Abcam, Cambridge, United Kingdom), mouse anti-TLR4 (1:2000, Proteintech), rabbit anti-SF3A1 (1:2000, Proteintech), rabbit anti-NF-κB p65 (1:500, Cell Signaling Technology), rabbit anti-phospho-NF-κB p65 (1:1000, Cell Signaling Technology), rabbit anti-IκBα (1:1000, Proteintech), rabbit anti-phospho-IκBα (1:1000, Bioworld Technology, Bloomington, United States). The protein bands were quantified by ImageJ Software, and normalized to GAPDH protein levels.
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7

Western Blot Analysis of Cell Signaling

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Equivalent extracted amounts of protein were separated with polyacrylamide SDS gels (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Thermo Fisher Scientific). They were then probed with different primary antibodies, including rabbit anti-CHN1 (1:150, Abcam), mouse anti-fibronectin (1:350, Invitrogen), rabbit anti-β-catenin (1:1000, CST, USA), rabbit anti-Snail (1:500, CST), rabbit anti-vimentin (1:1000, Proteintech Group), rabbit anti-E-cadherin (1:5000, Proteintech Group), rabbit anti-p-Akt (1:2000, CST), rabbit anti-Akt (1:1000, CST), and rabbit anti-p-GSK-3β (1:1000, CST), and the blots were detected with peroxidase-conjugated secondary antibodies (ZSGB-Bio). Signals were acquired using a chemiluminescence kit (Merck Millipore, Germany). Rabbit anti-β-tubulin (1:10,000) and mouse-anti GAPDH (1:10,000, both from Transgen Biotech, China) were used as internal controls. Universal anti-mouse/rabbit secondary antibodies were purchased from ZSGB-Bio (1:4000). To inhibit the PI3K/Akt pathway, the cells were treated with 5 μM PI3K inhibitor LY294002 (MedChem Express, USA) for 12 h.
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8

Immunodetection of Mitotic Proteins

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Primary antibodies used were rabbit anti-Mad2 (a gift from ED Salmon, Chapel Hill, NC, USA), Rabbit anti-Haspin (a gift from Dr Fangwei Wang, Zhejiang University, China), Mouse anti-BubR1 (BD Transduction, Waltham, MA, USA), Mouse anti-Bub1 (Millipore, Bedford, MA, USA), human anti-centromere (ACA) (Antibodies, Inc., Davis, CA, USA), mouse anti-β-tubulin (Sigma), mouse anti-Aurora A (BD Transduction), rabbit anti-mouse Aurora A (Bethyl, Montgomery, TX, USA), Mouse anti-Aurora B (AIM, BD Transduction), rabbit anti-H3S10ph (Millipore, Bedford, MA, USA), rabbit anti-H3T3ph (Millipore), rabbit anti-H2AT120ph (Active Motif, Carlsbad, CA, USA), mitotic phospho-epitopes (MPM-2; Millipore), rabbit anti-Plk1-pT210 (Epitomics, Cambridge, MA, USA), rabbit anti-AurA-pT288 (Cell Signaling Technology, Danvers, MA, USA), rabbit anti-AurB-pT232 antibody (Abcam, Cambridge, MA, USA), rabbit anti-GFP antibody (Abcam, ab290), rabbit anti-H3 (Abcam, ab1791), mouse anti-GAPDH (TransGen Biotech, Beijing, China), mouse anti-Flag (TransGen Biotech), mouse anti-GST (Proteintech, Wuhan, China). Secondary antibodies used were goat anti-rabbit or mouse HRP, donkey anti-rabbit or mouse Cy5, goat anti-rabbit or mouse Alexa 594, goat anti-human FITC or goat anti-rabbit or mouse Alexa 488 (Jackson Immuno-Research, Westgrove, PA, USA).
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