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78 protocols using hoechst 33342

1

Immunofluorescent Detection of Cell Signaling Markers

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After deparaffinization and antigen retrieval, 5-µm thick sections were incubated with the rabbit monoclonal anti-β-catenin antibody (1:200 dilution; catalog number: 8480; Cell Signaling Technology Inc., Danvers, MA), the rabbit polyclonal anti-microtubule-associated protein 1A/1B-light chain 3 (LC3) A/B antibody (1:200 dilution; catalog number: 4108; Cell Signaling Technology Inc.), and the rabbit monoclonal anti-cleaved caspase-3 (Asp175) antibody (1:200 dilution; catalog number: 9664; Cell Signaling Technology Inc.) overnight at 4°C. After being washed thoroughly in phosphate-buffered saline (PBS), sections were incubated in fluorochrome-conjugated donkey anti-rabbit IgG Northern Lights 557 secondary antibodies (1:200 dilution; catalog number: NL004; R&D Systems, Inc., Minneapolis, MN) for 1 h at room temperature. Sections were then counterstained with Hoechst 33342 (1:5000 dilution; catalog number: 62249; Thermo Scientific, Brookfield, WI). They were washed in distilled water before being cover-slipped using Vectorshield mounting media (Vector Laboratories, Burlingame, CA). An Olympus BX51 epifluorescence microscope (model: U-LH100-3, Olympus Optical Co., LTD, Tokyo, Japan) equipped with mercury burner and filter sets for detection of Northern Lights 557 (red) and Hoechst 33342 (blue) fluorescence, respectively, was used to examine the immunostaining of the sections.
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2

Immunofluorescence Staining of Akt in Cells

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Cells seeded on a 24-well glass bottom plate were subjected to the same stimulation conditions as those of the Western blot sample. The collected cells were set immediately on a metal block positioned on ice and were washed five times with ice-cold PBS. Then, 4% PFA was added to cells to fix them at room temperature (RT) for 20 min. The cells were then washed with PBS three times and were incubated with 0.2% Triton X-100 in PBS(+) for 15 min at RT. After cells were washed with PBS(+) supplemented with 0.1% Tween-20 (PBST), they were blocked with gelatin from cold-water fish for 1 h at RT. Then, cells were washed twice with PBST and were stained with Hoechst 33342 (1:1000, #62249; Thermo Fisher Scientific Inc., Waltham, MA, USA) for 10 min at RT. After rabbit anti-Akt antibody was dissolved in 2% BSA (in PBST) with 1:200 dilution, it was incubated at RT for 1 h. After washing with PBST another three times, secondary antibodies dissolved in 2% BSA (in PBST) were added to cells for shaking at RT for 1 h. After the final wash with PBST three times (5 min interval), cells were put to immediate microscopic observation using a confocal microscope (FV1200; Olympus Optical Co. Ltd., Tokyo, Japan) with a 10× or 60× lens and imaging acquisition condition: 10 μs pixel−1, 568 nm laser excitation, and 405 nm laser for Hoechst 33342, excitation.
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3

Fluorescent Imaging of Drug-Loaded Spheroids

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After an incubation period of 4 days, the spheroids were treated with 0.1 mg/mL of the indicated compounds for 72 h. The spheroids were washed twice with DPBS and CPT-loaded aggregates were stained with PI for 10 min to visualize dead cells. EPI-loaded aggregates were counterstained with Hoechst 33,342 (Fluka, Buchs, Switzerland). Fluorescence imaging was performed by using an Olympus IX73 inverted microscope with DAPI channel for Hoechst 33,342 and the CPT-loaded aggregates (λexcitation = 345 nm, λemission = 455 nm) and Cy3 channel for PI and the EPI-loaded aggregates (λexcitation = 550 nm, λemission = 565 nm).
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4

EdU Assay for MEF Proliferation

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The inhibitory effect of MMC on the proliferation of MEFs was measured using an EdU assay kit (Ribobio, Guangzhou, China) according to the manufacturer’s instructions. Briefly, inactivated MEFs were cultured in triplicate at 2 × 104 cells per well in 24-well plates. The cells were exposed to 50 μM EdU for 8–24 h at 37 °C. The cells were fixed with 4% formaldehyde for 15 min at room temperature and treated with 0.5% Triton X-100 for 20 min at room temperature for permeabilization. After 3× washes with PBS, the cells were treated with 100 μM 1 × ApolloR reaction cocktail for 30 min. Subsequently, cells were stained with 200 μl/well of Hoechst 33342 (5 μg/mL) for 30 min and visualized under a fluorescent microscope (Olympus, Japan). The number of EdU-positive cells was counted using open-source digitizing software (ImageJ 2.0.0, Wayne Rasband, National Institutes of Health, Bethesda, MD). The percentage of EdU-labeled cells was calculated as follows: EdU-positive cell number/Hochest-positive cell number.
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5

Cell Proliferation Quantification with EdU

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Cell‐Light EdU DNA cell proliferation kit (Ribo Bio) was used to determine the proliferation rate of A549R and H1299R cells according to the manufacturer's instructions. Briefly, cells were incubated with 50 μM EdU for 2 h, then fixed, permeabilized, and stained with EdU. The nuclei were stained with Hoechst 33342 at a concentration of 5 μg/ml for 30 min, and the cells were then inspected using a fluorescence microscope (Olympus). The viability index was calculated as follows: Viability index = experimental OD value/control OD value. In addition, 5‐ethynyl‐20‐deoxyuridine (EdU) was used to evaluate cell proliferation.
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Quantifying Apoptotic Nuclear Morphology

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Apoptotic nuclear morphology was assessed using Hoechst 33342 (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) in PBS buffer, as described previously (33 (link)). HepG2-mtGrx1-roGFP2 cells were grown in culture at 37°C for 12 h. Following 12 h of incubation at 37°C, the cells were perfused with oridonin (25 µM) in the presence or absence of SS31 (100 nM) at 37°C for 8 h. For morphological observation, cells were incubated with Hoechst 33342 (1 mg/ml) for 25 min at 37°C, washed and then examined using an Olympus FV1000 confocal laser scanning microscopy (Olympus Corporation) equipped with a ×40 objective at 350 nm excitation and 461 nm emission wavelengths.
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7

CLSM Analysis of Lysosomal Targeting

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CLSM analysis was performed as previously described [3 (link)]. Cells were seeded onto multiwell glass-bottom dishes (Matsunami Industries, Osaka, Japan) at a density of 2.0 × 104 cells/well in a final volume of 100 µL and incubated for 24 h at 37 °C under 5% CO2. The expression of LAMP-1-RFP was observed with excitation wavelength of 555 nm and emission wavelength of 580 nm. The intracellular distribution of His16-Lyso was also determined by CLSM. LysoTracker Green (Life Technologies, Carlsbad, CA, USA) and Hoechst 33342 (Dojindo, Kumamoto, Japan) were used as an organelle marker for lysosomes and a nuclear stain, respectively. After complete adhesion, His16-Lyso were added and the cells were incubated for 24 h. The culture medium was replaced with fresh medium, and Hoechst 33342 was added to the cells and incubated for 1 h. After two washes with PBS, fresh medium containing 500 nM LysoTracker Green was added, and the cells were incubated for 2 h. The intracellular distribution of His16-Lyso was observed and fluorescence images were acquired using a FluoView CLSM (Olympus, Tokyo, Japan).
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8

Quantifying Oxidative Stress in HMECs

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HMECs were cultured in 96-well plates (seeding density: 15,000 cells per well) and treated with bardoxolone methyl, dimethyl fumarate, and L-sulforaphane for 24 hours and incubated for 15 minutes with the following fluorescent dyes: dihydroethidium DHE (2 μg/ml, Thermo Fisher Scientific) and Hoechst 33342 (0.5 μl/ml, Thermo Fisher Scientific) at 37°C. After washing, images were captured with an Olympus Scan^R automated fluorescence microscope (Olympus Corporation) with the use of 20x magnification in two channels: DAPI for nuclei localization (Hoechst 33342, ex/em 346/460 nm) and Texas Red for reactive oxygen species/reactive nitrogen species (ROS/RNS) indication (DHE, ex/em 518/606 nm). Image analysis was performed with the use of a Columbus Image Data Storage and Analysis System (Perkin Elmer), and mean fluorescence intensity was normalized to the number of living cells.
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9

Microscopic Evaluation of Nuclear Morphology

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PANC-1 cells transfected with miR-29b mimics or inhibitors, or siRNA-DNMT3b, were cultured at 37°C for 24 h and stained with the addition of 0.1 µg/ml Hoechst 33342 (Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) to the culture medium. Fluorescence microscopy (Olympus IX71; Olympus Corporation) with a filter for Hoechst 33342 (365 nm) was used to detect the alterations in nuclear morphology.
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10

HUVEC Proliferation Assay with miR-21

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HUVECs in 96-well plate were transfected with miR-21 mimic, miR-21 mimic negative control, miR-21 inhibitor, and miR-21 inhibitor NC and were allowed to grow for 24 h. After medium was changed, VEGF (8 ng/mL) [14 (link)] was added into the wells with or without 50 µM cardamonin except for the control group, and the incubation was continued for another 24 h. Cell proliferation was assayed by 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium (MTS, Promega, Beijing, China) test according to the manufacturer's protocol. The absorbance at 460 nm was determined with a microplate reader (Bio-Rad, San Francisco, California, USA). For each group, 5 duplicate wells were detected per experiment. Cell nuclei were stained with Hoechst 33342 and observed with an inverted fluorescent microscope (Olympus, Tokyo, Japan).
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