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17 protocols using anti f4 80 bm8

1

Comprehensive Immunostaining of Frozen Tissues

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Frozen skin tissue sections were incubated with different primary antibodies at 4 °C overnight; antibodies included anti-CD49f-biotin (GoH3, 1:150, BioLegend), anti-Ki67 (20Raj1, 1:100, eBioscience), anti-Akt (GTX28932, phospho Ser473, 1:150, GeneTex), anti-Akt (Akt 1+2+3) (GTX121937, 1:150, GeneTex), anti-CD34-biotin (RAM34, 1:150, eBioscience), anti-Lgr-5 (ab137484, 1:200, Abcam), anti-CD45 (30-F11, 1:150, BioLegend), anti-CD45-Biotin (30-F11, 1:150, BioLegend), anti-F4/80-Biotin (BM8, 1:150, BioLegend), anti-F4/80 (BM8, 1:150, BioLegend), anti-Ly6C-Biotin (RB6-8C5, 1:200, BioLegend), anti-Ly6C (HK1.4, 1:200, BioLegend), anti-MHC II (14-4-4S, 1:200, eBioscience), anti-TNF-α (1F3F3D4, 1:100, eBioscience), anti-TNFR1-Biotin (55R-170, 1:100, BioLegend), anti-β-catenin (C2206, 1:150, Sigma) and anti-Phospho-β-Catenin (Ser552) (5651S, 1:100, CST Signaling). Secondary antibodies with different fluorescence conjugates (FITC, Cy3/TRITC and Alex Fluor 647) were used for detection, and cells were visualized with an Olympus FV1000 confocal microscope.
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2

Flow Cytometry Analysis of Immune Cells

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For FP infections, feet (cut at the ankles) were minced into small pieces (∼3 mm) and incubated on a rotatory shaker at 37°C for 1 h in a 0.5% (wt/vol) solution of type I collagenase (Worthington). The suspension of cells, LN, or PECs were passed through a 40-μm cell strainer (Fisher Scientific). Red blood cells were lysed with ACK (i.e., ammonium chloride-potassium) lysis buffer. Cells were stained for flow cytometry analysis with the following fluorochrome-conjugated antibodies for cellular subsets: anti-Ly6G (1A8), anti-Ly6C (HK1.4), anti-F4/80 (BM8), and anti-CD11c (N418) (all from BioLegend), anti-CD49b (DX5) from eBioscience, and anti-CD11b (M1/70) from BD Pharmingen. Data were acquired on BD LSR II flow cytometer (BD Biosciences) and analyzed using FlowJo software, version 10.1.
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3

Multiparametric Flow Cytometry for Immune Cell Profiling

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For IFN-γ and IL-17 intracellular cytokine staining, in vitro restimulated cells were first stained with anti-CD4 (GK1.5) and anti-CD90.2 (30-H12) antibodies, then fixed and permeabilized with Intracellular Staining Fixation/Permeabilization Wash Buffer (Biolegend, San Diego, CA) and stained intracellularly with anti-IFN-γ (XMG1.2) and anti-IL-17 (9B10) antibodies. For cell phenotype detection, single-cell suspensions were stained with the following antibodies: anti-CD3ε (145-2C11), anti-CD90.2 (30-H12), anti-CD45 (30-F11), anti-CD4 (GK1.5 or RM4-4), anti-CD11b (M1/70), anti-CD8α (53-6.7), anti-CD19 (6D5), anti-MHC class II (M5/114.15.2), anti-CD69 (H1.2F3), anti-CD25 (3C7), anti-CD44 (IM7), anti-CD103 (2E7), anti-TCRγδ (UC7-13D5), anti-Ly6C (HK1.4), anti-Gr-1 (RB6-8C5), anti-CD11c (N418), and anti-F4/80 (BM8) purchased from Biolegend or BD Pharmingen. Multiparameter analyses were performed on a BD FACS Aria II or a BD FACS Calibur flow cytometer.
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4

Immunohistochemical Analysis of Tissue Samples

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Tissue samples were cut and snap frozen in optimum cutting temperature (O.C.T., Fisher Scientific, Houston, TX). 6 um cryo-sections of tissue sections were cut and fixed with pre-cold acetone for 20 min. Immunostaining was performed as previously described (Fu et al., 2014 (link)). Before adding primary mAbs, sections were blocked with 5% normal donkey serum (Jackson ImmunoResearch, West Grove, PA). The following mAbs were used in different combinations as indicated in the figure legends: anti-CRIg mAb (a gift from Genentech, South San Francisco, CA); anti-F4/80 (BM8, BioLegend); anti-CD4 (RM4-5, BioLegend). Nuclei were stained with DAPI (4',6-Diamidino-2–28 phenylindole dihydrochloride) (Invitrogen). Images were acquired on an AxioImager microscope (Zeiss, Thornwood, NY), and were processed with ImageJ (NIH). For histology assays, the pancreases were removed and fixed with 10% formalin solution. Fixed tissue blocks were paraffin-embedded, sectioned, and stained with haematoxylin and eosin.
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5

Comprehensive Tumor Cell Dissociation

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Excised tumors were washed with PBS, dissected into smaller fragments using scalpels, and further dissociated into single cell suspensions using the Miltenyi Tumor Dissociation Kit (#130-096-730) and the GentleMACS Octo dissociator (Miltenyi #130-095-937). The digested tumors were filtered through 100μM & 30μM pre-separation filters (Miltenyi #130-098-463,130-098-458), washed with PBS, and then used for flow cytometry or RNA based analysis.
For each sample, 1 x 106 cells were treated with mouse Fc Blocking solution (Miltenyi, #130-092-575) and then stained with a defined panel containing live/dead stain (Life Technologies, #L34957) and seven different labeling antibodies. Anti-CD3 (145-2C11), anti-CD4 (RM4-5), anti-CD8 (53–6.7), anti-CD45R (RA3-6B2), anti-CD25 (PC61), anti-CD11b (M1/70), anti-CD11c (HL3) were purchased from BD Biosciences. Anti-CD14 (Sa2-8), anti-FoxP3 (FJK-16s), and anti-CD45 (30-F11) were purchased from eBioscience. Anti-CD49b (DX5), anti-GR1 (RB6-8C5), and anti-F4/80 (BM8) were purchased from BioLegend. Perm/Wash Buffer (BD Biosciences, #554714) was used to permeabilize and facilitate intracellular staining. All samples were fixed with 2% paraformaldehyde, acquired on a BD FACSCanto II, and analyzed by FlowJo software (v10.1r7).
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6

Multiparametric Flow Cytometry Analysis

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The harvested spleens were mashed and single-cell suspensions of the spleens were stained with the following surface antibodies: anti-CD45 (30-F11, BD Biosciences), LIVE/DEAD Fixable Blue cell stain (Invitrogen), anti-CD19 (ID3, BD Biosciences), anti-CD8a (53-6.7, BioLegend), anti-CD27 (LG7F9, eBioscience), anti-CD11b (M1/70, BioLegend), anti-CD11c (HL3, BD Biosciences), anti-CD86 (GL1, BioLegend), anti-NK1.1 (PK136, BioLegend), anti-NKp46 (29A1.4, BioLegend), anti-MHC Class II (M5/114.15.2, BD Biosciences), anti-F4/80 (BM8, BioLegend), anti-CD80 (16-10A1), anti-CD3 (17A2, BioLegend), anti-CD4 (RM4-5, Invitrogen), anti-CTLA-4 (UC10-4B9, BioLegend), anti-PD-1 (29F.1A12, eBioscience), anti-CD28 (37.51, BioLegend), anti-CD44 (IM7, BD Biosciences), anti-CD43 (1B11, BioLegend), anti-CD47 (miap301, BioLegend), anti-CD62L (MEL-14, BioLegend), anti-CD25 (PC61.5, eBioscience), and anti-CD107a (1D4B, BioLegend). Intracellular staining was then performed with a FOXP3 permeabilization and fixation kit (eBioscience) according to manufacturer’s recommendations using the following antibodies: Ki-67 (B56; BD Biosciences) and GrB (QA16A02, BioLegend). Flow cytometric data were collected with a Beckman Coulter Cytoflex LX (6-L NUV) flow cytometer and analyzed using FlowJo software (Tree Star).
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7

Multiparameter Immune Cell Profiling

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Spleens and bone marrow (BM) from naïve mice were harvested from age- and sex-matched cohorts, and red blood cells were lysed by ammonium chloride lysis. Splenocytes were incubated for 30 minutes on ice with the following antibodies and dyes: viability (Zombie Aqua, Biolegend), anti-B220 (RA3–6B2, BD Biosciences), anti-CD19 (6D5, Biolegend), anti-CD23 (B3B4, Biolegend), anti-CD93 (AA4.1, Biolegend), anti-Ly77 (GL7, Biolegend), anti-IgD (11-26C.2a, Biolegend), anti-IgM (RMM1, Biolegend). and anti-F4/80 (BM8, Biolegend). BM was incubated for 30 minutes on ice with the following antibodies and dyes: anti-B220 (RA3–6B2, BD Biosciences), anti-CD138 (281-2, Biolegend), anti-VpreB (R3, Biolegend), and anti-CD24 (M1/69, Biolegend). FCRL1 expression in different cell types in the bone marrow and spleen was tracked with anti-CD307a (REA566, Miltenyi).
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8

BrdU Uptake in Immune Cells

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BrdU was delivered to mice through drinking water at the concentration of 1mg/ml + 1% glucose. Spleen and lymph nodes were harvested on day 6 post-immunization or infection. Following tetramer enrichment, cells were stained with cell surface antibodies [anti-CD3, anti-CD4, anti-CD19 (eBio (1D3), eBiosciences), anti-CD8α, anti-CD11c (eBiosciences), anti-F4/80 (BM8, Biolegend) and anti-CD5 (53–7.3, BD Pharmingen)] followed by intracellular anti-BrdU (BD Pharmingen) antibody according to the BrdU flow kit protocol (BD Biosciences).
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9

Multi-Dimensional Flow Cytometry Analysis

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Spleens were harvested and single-cell suspensions were prepared from each animal. Samples were stained with anti-CD3 (17A2, Biolegend, San Diego, CA), anti-CD4 (RM4.5, BD Bioscience), anti-CD8 (MCD0830, Invitrogen, Waltham, MA), anti-Gr-1 (RB6.8C5, BD Pharmingen, San Jose, CA), anti-B220 (RM2630, Invitrogen), anti-CD19 (CD5, Biolegend), anti-CD11b (M1-79, Biolegend), anti-CD11c-PE (HL3, eBioscience, Waltham, MA), anti-MHCII (M5/114.15.2, eBiosciences), anti-F4/80 (BM8, Biolegend), anti-CD25 (PC61, Biolegend), anti-FoxP3 (FJK-16S, eBioscience), anti-CD44 (IM7, Biolegend), and anti-CD62L (MEL-14, eBioscience). Similar techniques were used for flow cytometry on lung tissue. Samples were run on an LSR II flow cytometer (BD Biosciences) and analyzed using FlowJo software version10.0.7 (TreeStar, Ashland, OR).
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10

Cytokine Production Evaluation by Flow Cytometry

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To evaluate cytokine production by flow cytometry, 1 × 106 cells were re-stimulated with 100 ng/ml PMA (Sigma-Aldrich), 1 μg/ml ionomycin (Sigma-Aldrich), and 1 μl/ml Monensin (BD Biosciences) in RPMI1640 media with 10% FBS for 4 h. Suspended mouse cells were treated with mouse Fc block (BD Biosciences) for 10 min and stained with anti-CD90.2 (30-H12; Biolegend), anti-CD4 (RM4-5; Biolegend), anti-CD45 (30-F11; Biolegend), and the lineage antibody cocktail containing anti-CD3e (145-2C11; BD Biosciences), anti-CD19 (1D3; BD Biosciences), anti-CD49b (DX5; BD Biosciences), anti-CD11b (M1/70; BD Biosciences), anti-CD11c (HL3; BD Biosciences), anti-F4/80 (BM8; Biolegend), and anti-FcεRIα (MAR-1; Biolegend) on ice for 30 min. The mouse cells were then fixed and permeabilized with BD Cytofix/CytopermTM solution (BD Biosciences) on ice for 20 min and stained with anti-IL-5 (TRFK5; Biolegend) and anti-IL-13 (eBio13A, eBioscience) on ice for an hour. All stained cells were analyzed by flow cytometry, BD LSRFortessa X-20 (BD Biosciences). The data were analyzed using FlowJo v10.6.1 software (BD Biosciences).
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