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Versadoc 5000 system

Manufactured by Bio-Rad
Sourced in United States

The VersaDoc 5000 system is a digital imaging platform designed for capturing, analyzing, and documenting gel-based assays. It features a high-resolution CCD camera and a selection of emission filters to support a variety of gel detection methods, including colorimetric, fluorescent, and chemiluminescent. The system provides a user-friendly interface for image acquisition and basic analysis.

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12 protocols using versadoc 5000 system

1

Western Blot Analysis of UCN3 in 3T3-L1 Cells

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Western blots were performed using 3T3-L1 cells. Whole cell extracts were prepared in RIPA buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1% Triton X-100, 1 mM EDTA, 0.5% sodium deoxycholate, and 0.1% SDS). Protein concentration was determined by the Bradford method using β-globulin as a standard. Twenty microgram of protein was prepared in sample loading buffer containing β-mercaptoethanol heated at 95°C for 10 min, then resolved on 12% SDS-PAGE gels. Proteins were then transferred at 100 V for 75 min onto PVDF membranes, blocked with 5% non-fat dried milk in Tris-buffered saline containing 0.05% Tween 20 (TBST) for 2 h at RT, and then probed with the anti-UCN3 primary antibody (1:1,000 dilution) (bs-2786R, Bioss Antibodies Inc., MA, USA) for overnight at 4°C. After washing, the membranes were incubated with Rabbit horseradish peroxidase conjugated secondary antibody (1:10,000 dilution) for 2 h at RT, and finally detection was performed using super sensitivity West Femto ECL reagent (Thermo Scientific, USA). Protein bands were visualized by chemiluminescence and the images captured by using the Versadoc 5000 system (Bio-Rad, USA). GAPDH was used as internal control to monitor for protein loading, with the anti-GAPDH (ab2302, Millipore, Temecula, CA). For densitometric analysis, the intensity of bands was determined using Quantity One Software (Bio-Rad, USA).
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2

DNAJC27 Protein Expression Analysis

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Western blot analysis was performed using whole PBMC extracts prepared in RIPA buffer (50 mM Tris HCL pH 7.5, 150 mM NaCl, 1% Triton × 100, 1 mM EDTA, 0.5% Sodium deoxycholate, and 0.1% SDS). Protein concentration was determined using the Bradford method with bovine serum albumin (sigma Aldrich) dissolved in RIPA as a standard. The protein samples (20 μg) were resolved in 10% acrylamide gels, then transferred onto PVDF membranes, and blocked with 5% non-fat dried milk in Tris-buffered saline containing 0.05% Tween 20 for 2 h at room temperature. The membranes were incubated with primary antibody against DNAJC27 diluted 1:1000 (Abgent Cat. # AP12755a, San Diego, California, USA) overnight at 4°C. The next day, the membranes were washed and incubated with secondary anti-rabbit antibody (GE Amersham Cat. # NA9340) with a 1:10,000 dilution). Protein bands were visualized using chemiluminescence (Super signal, Thermo Fischer) and images were captured using Versadoc 5000 system (Bio-rad, Hercules, CA).
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3

Western Blot Protein Detection

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Target proteins were revealed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and western blot analysis. The cells were lysed using cell lysis buffer (Sigma-C2978) with protease inhibitors (Complete Protease Inhibitor Tablets; Boehringer Mannheim, Indianapolis, IN, USA). The proteins were separated using 10% SDS-PAGE and electrotransferred onto polyvinylidene difluoride (PVDF) membranes. The membranes were incubated overnight at 4 °C with a primary antibody against a specific target and chemiluminescent detection was uses a horseradish peroxidase-conjugated secondary antibody (1:5000). The signals were visualized with a chemiluminescence reagent (GE Healthcare Life Sciences, Pittsburgh, PA, USA) and detected using the VersaDoc 5000 system (Bio-Rad Laboratories, Hercules, CA, USA) [33 (link)].
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4

Protein Extraction and Western Blotting Protocol for CRC Cell Lines

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For protein extraction from CRC cell lines, a total of 1 × 106 cells were seeded into 10 cm culture dishes. The resulting cell lysates were separated using sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and subsequently transferred onto polyvinylidene fluoride membranes (GE Healthcare, Piscataway, NJ, USA) for subsequent antibody blotting. The membranes were then incubated with primary antibodies targeting CWH43 (Thermo Fisher Scientific, Waltham, MA, USA BS-9959R), GAPDH (IR3-8, iReal Biotechnology, Inc.), β-catenin (sc-7963, Santa Cruz Biotechnology, Santa Cruz, CA, USA), N-cadherin (13116, Cell Signaling Technology, Danvers, MA, USA), vimentin (iR45-137, iReal Biotechnology Co., Hsinchu City, Taiwan), E-cadherin (3195, Cell Signaling Technology, Danvers, MA, USA) at 4 °C overnight. Following this, the membranes were probed with corresponding secondary antibodies. The protein bands were visualized using an enhanced chemiluminescence reagent (GE Healthcare, Piscataway, NJ, USA) and were captured using the VersaDoc 5000 system (Bio-Rad Laboratories, Hercules, CA, USA).
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5

Western Blot Analysis of Stress Peptides

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Western blots were performed using THP1 cells. Whole cell protein extracts were prepared using radioimmunoprecipitation assay (RIPA) buffer as reported earlier [17 (link)]. Protein concentrations were quantified using Bradford method and samples were prepared in sample loading buffer. Proteins were resolved on 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gels, transferred onto polyvinylidene fluoride (PVDF) membranes and probed with anti-UCN1 (PA5-75189, Invitrogen, CA, USA), anti-UCN2 (LS-C-335681-200, Lifespan Biosciences, Seattle, WA, USA), anti-UCN3 (bs-2786R, Bioss antibodies, Woburn, MA, USA), anti- CRF (ab184238, Abcam, Cambridge, UK), anti-SPEXIN (LS-C73416, Lifespan Biosciences, Seattle, WA, USA) and anti-GAPDH (ab2302, Millipore, Burlington, MA, USA) overnight at 4 °C. Following washes and incubation with rabbit horseradish peroxidase-conjugated secondary antibody, proteins were detected using West Femto ECL reagent (Thermo Scientific, Waltham, MA, USA). Protein bands were captured using Versadoc 5000 system (Bio-Rad, Hercules, CA, USA) and GAPDH was used as an internal loading control.
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6

Western Blot Analysis of RANTES in PBMCs

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Cell lysates were prepared from PBMCs by the addition of RIPA buffer (50 mM Tris-HCl pH 7.5, 150 mM NaCl, 1% Triton x100, 1 mM EDTA, 0.5% Sodium deoxycholate, and 0.1% SDS). Protein concentration was determined by Bradford method using globulin as a standard and 20 μg of proteins was resolved on 10% SDS-PAGE gels. Proteins were transferred onto PVDF membranes and probed with primary and secondary antibodies using standard protocols. Protein bands were visualized by chemiluminescence and the images were captured by using the Versadoc 5000 system (BioRad, Hercules, CA). The primary antibodies used in this study are raised against RANTES (Abcam, Cambridge, MA) and Actin (Santa Cruz Biotechnology, Santa Cruz, CA). For densitometric analysis, the intensity of the bands was determined using Quantity One Software (BioRad, Hercules, CA).
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7

Western Blot Analysis of NRF2 and KEAP1

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PBLs were lysed with the buffer containing 50 mM EDTA, 50 mM NaCl, 1% SDS, and 200 μg/ml proteinase K and treated at 37°C for 6 h [31 (link)]. The proteins were separated by 10% polyacrylamide gel and transferred to polyvinylidenedifluoride (PVDF) membranes (Millipore, CA, USA). The membrane was blocked with 5% nonfat milk and incubated with NRF2 (ab31163, 1 : 2000, Abcam), KEAP1 (ab139729, 1 : 1000, Abcam), and β-actin antibodies (ab8227, 1 : 5000, Abcam) from Abcam overnight at 4°C. The membrane was then incubated with secondary antibody goat anti-rabbit IgG H&L (HRP) (ab6721, 1 : 3000) for 2 h at room temperature. Immunoreactivity bands were visualized by using ECL Prime (GE Healthcare Science) and analyzed using a VersaDoc 5000 System (Bio-Rad). Quantification was estimated using ImageJ software (version 1.42; the National Institutes of Health, Bethesda, MD, USA).
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8

GRP78 Expression Analysis in Esophageal Cancer

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Western blot analysis was performed as previously described to detect the expression levels of GRP78 in esophageal cancer tissues or cell lines. The cells were washed with cold PBS and lysed with RIPA buffer, which contained protease inhibitors. Afterward, 30 μg of protein were resolved on a sodium dodecyl sulfate denaturing polyacrylamide gel and transferred onto polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA). The membranes were subsequently blotted using an anti-GRP78 antibody (1:1,000; Abcam) or anti-β-actin antibodies (1:2,000; Proteintech, Chicago, IL, USA). After these membranes were incubated at 4°C overnight, the secondary antibodies (1:2,000; Proteintech) were added, and the resultant mixture was incubated for 1 h at 4°C. The immune complexes were visualized with an enhanced chemiluminescence Plus kit (GE, Fairfield, CT, USA) and detected using a VersaDoc 5000 system (Bio-Rad Laboratories, Hercules, CA, USA) in accordance with the manufacturer’s protocol.
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9

Western Blot Analysis of PBMC Extracts

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Western blots were carried out on whole PBMC extracts prepared in RIPA buffer (50 mM Tris–HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton ×100, 0.5% Sodium deoxycholate, 0.1% SDS and supplemented with a mini complete protease inhibitor cocktail (Roche Diagnostics, Laval, Quebec). Protein concentration was determined by Bradford method using globulin as a standard. For Western blot, 20 μg of proteins were resolved on 10% or 12% SDS-PAGE gels. Proteins were then transferred onto PVDF membranes, blocked with 5% non-fat dried milk in Tris-buffered saline containing 0.05% Tween 20 (TBST) for 1 h at RT and then probed with the primary antibody for overnight at 4°C. After washing, the membranes were incubated with horseradish peroxidase-conjugated secondary antibody for 2 h at RT. Finally, protein bands were visualized by chemiluminescence and the images were captured by using the Versadoc 5000 system (BioRad, Hercules, CA). Primary antibodies used here were the same mentioned in the IHC section. Actin (Santa Cruz Biotechnology, Santa Cruz, CA) was used as internal controls. For densitometric analysis, the intensity of the bands was determined using Quantity One Software (BioRad, Hercules, CA).
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10

Western Blot Analysis of GRP78 and EPHX2

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Western Blot analysis was performed using PBMCs from lean and obese subjects (at least n = 9 for each group), differentiated 3T3-L1 cells, and 3T3-L1 preadipocytes as previously reported [43 (link)] (3 independent experiments). Briefly, whole cell extracts were prepared in RIPA buffer, and protein concentration was determined using the Bradford method using β-globulin as a standard. Protein samples (20 µg) were loaded and resolved on 12% SDS-PAGE gels. After transfer to PVDF membranes, the proteins were probed with anti-GRP78 (Abcam, Cambridge, MA, USA) and anti-EPHX2 antibodies (OriGene Technologies, Inc., Rockville, MD, USA) overnight at 4 °C. After washing, the membranes were incubated with rabbit horseradish-peroxidase-conjugated secondary antibody for 2 h at room temperature and the proteins visualized using super sensitivity West Femto-ECL reagent (Thermo Scientific, Waltham, MA, USA). Protein bands were visualized by chemiluminescence and the images captured using the Versadoc 5000 system (Bio-Rad), and the bands intensity was determined using Quantity One Software (Bio-Rad). GAPDH was used as an internal control for protein loading and was detected with an anti-GAPDH antibody (ab2302; Millipore, Temecula, CA, USA).
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