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11 protocols using azd7762

1

Detailed Inhibitor Concentrations for DNA Damage Response

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Chemical inhibitors were obtained from the following suppliers and used at the indicated concentrations: KU55933 (ATMi) (Hickson et al., 2004 (link)) (118500, Millipore, 20 μM), VE-821 (ATRi) (Reaper et al., 2011 (link)) (A11605, Adooq Bioscience, 20 μM), SB218078 (Chk1i) (559402, Millipore, 5 μM), AZD7762 (Chk1/2i) (SML-0350, Sigma, 2 μM), MG-132 (Sigma, 25 μM), CHX (C7698, Sigma, 50 μM), AraC (C1768, Sigma, 50/5 μM), HAMNO (SML1234, Sigma, 20 μM), KU60019 (HY-12061, Insight Biotechnology, 10 μM), VE-822 (10 μM), AZ20 (Foote et al., 2013 (link)) (HY-15557, Insight Biotechnology, 15 μM), T2AA (SML0794, Sigma, 20 μM), KPT-251 (5005050001, Millipore, 20 μM), bortezomib (2 μM), carfilzomib (17554, Cambridge Bioscience, 2 μM), and CldU (C6891, Sigma, 5 μM).
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2

Cell Culture Assay Compound Solubilization

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All drugs were solubilized in 100% DMSO for a stock concentration of 10mM for use in all cell culture assays. Palbociclib (Sigma #PZ0199), ribociclib (Med Chem Express #HY-15777A), abemaciclib (Med Chem Express #HY-16297A), staurosporin (Sigma #S6942), NU7441 (Selleck #S2638), and AZD7762 (Sigma #SML0350) were all purchased commercially.
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3

Evaluating Estrogen Receptor Modulators

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Tamoxifen was obtained from MedChemExpress (HY-13757A). Fulvestrant was obtained from MedChemExpress (HY-13636). AZD9496 was obtained from MedChemExpress (HY-12870). NU7441, an inhibitor of DNA protein kinase catalytic subunit (DNAPKcs), was obtained from Selleckchem (Ku-57788). AZD7762, an inhibitor of Chk1/2, was purchased from Sigma (SML0350). β-estradiol was obtained from MedChemExpress (HY-B0141). All compounds were solubilized in DMSO.
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4

Combinatorial Cancer Therapy Evaluation

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Gemcitabine, AZD7762, and PF477736 were purchased from Sigma (Sigma, MO, USA). Cisplatin was purchased from Tocris Bioscience (Cat#2251). Propidium Iodide Staining Solution was purchased from BD Bioscience (San Jose, CA, USA). Antibodies against CDKN1A, TP53, PARP-1, P-γH2Ax, p-Chk1-317, p-Chk-345 were purchased from Cell Signaling Tech. (New Bedford, MA). Beta-Actin antibody (Santa, Cruz) was used as protein loading control. DMEM was obtained from Cellgro (Manassas, VA, USA) and supplements were from Invitrogen (Carlsbad, CA, USA).
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5

Intravital Imaging of Mammary Gland Dynamics

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R26-CreERT2;R26-mTmG mice were intraperitoneally injected with 0.2 mg tamoxifen per 25 g body weight diluted in sunflower oil (Sigma) at 3 weeks of age. At 5 weeks of age, a mammary window was inserted near the fourth and fifth mammary glands (for details, see ref. 31 (link)). Mice were anaesthetized using isoflurane (1.5% isoflurane/medical air mixture) and placed in a facemask with a custom designed imaging box. Mice were intraperitoneally injected with AZD-7762 (0.5 mg in PBS, Sigma) every 5 h during the time-lapse imaging. Imaging was performed on an inverted Leica SP8 multiphoton microscope with a chameleon Vision-S (Coherent Inc.), equipped with four HyD detectors: HyD1 (< 455 nm), HyD2 (455–490 nm), HyD3 (500–550 nm) and HyD4 (560–650 nm). Different wavelengths between 700 nm and 1,150 nm were used for excitation; collagen (second harmonic generation) was excited with a wavelength of 860 nm and detected in HyD1. GFP and Tomato were excited with a wavelength of 960 nm and detected in HyD3 and HyD4. TEBs and ducts were imaged every 20–30 min using a Z-step size of 3 μm over a minimum period of 8 h. All images were in 12 bit and acquired with a 25× (HCX IRAPO N.A. 0.95 WD 2.5 mm) water objective.
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6

Thermal Shift Assay for MerTK Inhibitor Screening

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First, we screened for MerTK inhibitors with an inhouse kinase library using the thermal shift assay method. To the mixed solutions (0.5 mg/mL MerTK and 10 µM library compounds in reaction buffer (20 mM Tris-HCl, pH 8.0, 0.5 M NaCl, 2 mM DTT)) was added protein thermal shift dye (from Protein Thermal Shift™ Dye Kit, 1× final concentration; Applied Biosystems, Waltham, MA, USA). To avoid finding too many hits with low affinity, we used compounds at low concentration. The shifts of the Tm were measured and visualized with Quantstudio 6 real time PCR (Applied Biosystems, Waltham, MA, USA).
AZD7762 (Sigma-Aldrich, St. Louis, MO, USA) was incubated with MerTK and Axl kinase (0.5 mg/mL) at three different concentrations (10 µM, 20 µM, and 50 µM) for the dose–response thermal shift assay.
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7

Kinase Inhibition Assay in Zygotes

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For kinase inhibitor experiments zygotes were incubated after scoring for visible pronuclei at 20 hr post-hCG (corresponding to early/mid G1 phase) in continuous presence of the respective inhibitor [10 μM KU-55933 (Hickson et al., 2004 (link)), Sigma-Aldrich; 10 μM VE-821 (Charrier et al., 2011 (link), Reaper et al., 2011 (link)), Sigma-Aldrich; 10 μM NU7026 (Veuger et al., 2003 (link)), Sigma-Aldrich; 2 mM caffeine (Sarkaria et al., 1999 (link)), Sigma-Aldrich; 100 nM AZD7762 (Zabludoff et al., 2008 (link)), Sigma-Aldrich; 5 μM NSC109555 (Jobson et al., 2007 (link)), Sigma-Aldrich; 10 nM PF-477736 (Blasina et al., 2008 (link)), Sigma-Aldrich]. Incubation in Tet3 inhibitor [1 mM Dimethyloxalylglycine (DMOG) (Amouroux et al., 2016 (link)), Sigma-Aldrich] directly followed zygote isolation at 17-18h post-hCG.
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8

Modulation of GSNOR Levels

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H2O2, KU55933, AZD7762, N6022, PMA, ionomycin, pifithrin‐α, CCCP, cycloheximide, trigonelline, dipropylenetriamine (DPTA) NONOate, hydroxyurea, neocarzinostatin, trypan blue, antimycin A, oligomycin A, and salts used for buffers were from Sigma‐Aldrich. All the compounds were used in a range of concentrations that did not per se induce any significant modulations of GSNOR levels (Appendix Fig S6), i.e., KU55933, 5 μM; AZD7762, 20 nM; and pifithrin‐α, 20 μM. Other concentration used are as follows: H2O2, 100, 200 or 400 μM; cycloheximide, 30 μM; trigonelline, 2.5 μM; neocarzinostatin, 0.5 μg/ml; DPTA, 400 μM; HU, 2 mM; CCCP, 5 or 10 μM; N6022, 25 μM; PMA, 200 ng/ml; ionomycin, 300 ng/ml; antimycin A, 1 μM; and oligomycin A, 1 μM, unless otherwise indicated.
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9

Evaluating Cytotoxic and NF-κB Modulators

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TNFα, 5-FU, CPT, and phleomycin were purchased from Sigma Aldrich (St. Louis, MO); oxaliplatin and erlotinib were purchased from LC laboratories (Woburn, MA). Stock concentrations of the compounds were prepared in sterile water (TNFα and phleomycin) or in dimethylsulfoxide (DMSO) (5-FU, CPT, oxaliplatin, and erlotinib), and stored at -40°C, except TNFα, which was stored at -80°C. Antibodies against p65, NF-κB, cIAP2, and Bcl-XL were purchased from Cell Signaling Technology (Danvers, MA), and anti-tubulin (M2) antibody from Sigma Aldrich. SignalSilence® NF-κB p65 siRNA I (#6261) was purchased from Cell Signaling Technology and NF-κB inhibitor III (SM7368) from EMD Millipore (Billerica, MA). The Chk1/Chk2 specific inhibitor AZD-7762 was purchased from Sigma Aldrich (St. Louis, MO).
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10

Cell Line Characterization and Reagent Procurement

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GEM and AZD7762 were purchased from Sigma-Aldrich (St. Louis, MO, USA)
and Selleckchem (Houston, TX, USA), respectively. TL32711 was provided by
TetraLogic Pharmaceuticals (Malvern, PA, USA). Human breast cancer cell lines
HCC1806, HCC38, MB468, BT549, Hs678T, MB231, HCC70, HCC1937, HCC1395, and BT20
were purchased from the American Type Culture Collection (Manassas, VA, USA).
All cell lines were grown in RPMI medium 1640 supplemented with 10% (v/v) fetal
bovine serum and 100 mM penicillin-streptomycin at 37°C, which were
purchased from Invitrogen (Carlsbad, CA, USA). TNF-α neutralizing
antibody and caspase inhibitor z-VAD-FMK were purchased from Cell Signaling
(Danvers, MA, USA) and Promega (Madison, WI, USA), respectively.
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