The largest database of trusted experimental protocols

2 protocols using sc 61

1

ChIP-qPCR on Stamp2 Promoter

Check if the same lab product or an alternative is used in the 5 most similar protocols
ChIP experiments were carried out according to standard protocols (Upstate Biotechnology) with a crosslinking step (1% formaldehyde at 37 °C), followed by a quenching step with 125 mm glycine. Chromatin was sheared using the Bioruptor sonicator (Diagenode). Sonicated chromatin (350 μg) was immunoprecipitated with antibodies against anti-C/EBPα antibody (Santa Cruz, sc-61 or Abcam, ab40764) or a nonspecific polyclonal antibody. Immune complexes were captured with protein A-agarose beads, and eluted in SDS buffer. Formaldehyde crosslinking was reversed, followed by DNA purification using phenol/chloroform/isoamyl alcohol (Sigma-Aldrich) and quantified by qRT-PCR using the following primers: distal Stamp2 promoter forward 5’-GTT CTT TTC TGG CCT ACA GAT AGT-3’, reverse 5’- GGC ATC TCA CTC CTT AA GAG ACT-3’; Proximal Stamp2 promoter forward 5’-GGC AGG AGA AAG ACA CCA CTA TT-3’, reverse 5’- TTT AAG CCA AAG AGC GGA GGA G-3’.
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were washed in PBS and protein was extracted by incubating cells in lysis buffer (20 mM HEPES [pH7.7], 0.3 M NaCl, 0.2 mM EDTA, 1.5 mM MgCl2, 1% Triton X-100, 0.1% SDS with 1X Protease inhibitor cocktail [Roche] and Phosphatase inhibitor cocktail [Roche]) for 1 h on ice. 50 μg of protein extract was resolved in an 8% polyacrylamide-SDS gel, blotted to a PVDF membrane and incubated with antisera against STAMP2 (Medprobe, 1:1000), GRP78 (Cell signaling, cs3183) (1:600) ATF4 (Cell signaling, cs1185) (1:1000), CHOP (Cell signaling, cs2895) (1:1000), C/EBPα (Santa Cruz, sc-61 or Abcam, ab40764) (1:500), aP2/FABP4 (Abcam, ab81605) (1:1000), or β-Actin (Cell signaling, cs47778) (1:10000) in 5% BSA in TBS-0.1% Tween. Western images were obtained with a Kodak imaging station 4000R and the band intensities were quantified using Carestream Imaging Software.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!