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13 protocols using calcium free dmem

1

Calcium-free HaCaT Cell Differentiation

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For the differentiation assay, HaCaT were maintained in calcium free DMEM (Invitrogen) in order to keep HaCaT cells in an undifferentiated state [12] (link), [13] (link). Infections with recombinant adenoviruses expressing the GFP-E2 fusion proteins or GFP only were done at a multiplicity of infection of 250, in 1 mL of DMEM complemented with 4 μM polybrene for 1 h at 37°C. The medium was then replaced by fresh medium with 10% fetal bovine serum. Cells were collected 24 h or 48 h later and subjected to RNA extraction.
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2

Neuronal Treatment with Small Molecules

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Neurons were treated (30 min to 16h) with DMSO or with the different drugs in DMSO added directly to DMEM (cat# 11960–044) without serum, supplemented with 0.5 mM L-GlutaMAX and 1 mM sodium pyruvate (all from Invitrogen). In some experiments, cells were treated in Calcium-free DMEM (cat# 21068–028, Invitrogen). The final DMSO concentration in the medium was 0.5%.
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3

Endocytosis Assay for IL2R-E-cadherin Chimeras

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A fluorescence-based assay to follow the endocytosis of IL2R-E-cadherin chimeras was carried out as described in Nanes et al. (2012 (link)). Cells were switched into calcium-free DMEM (Life Technologies, Grand Island, NY) with 10% dialyzed FBS (Life Technologies) 24 h before labeling. Cells were labeled with anti–IL-2R in calcium-free culture medium at 4°C for 30 min. After unbound antibody was removed with a brief wash in PBS, cells were incubated in culture medium at 37°C for 10 min to induce endocytosis. Cells were subsequently returned to 4°C and rinsed, and the remaining surface antibody was stripped with a low-pH wash (PBS with 100 mM glycine, 20 mM magnesium acetate, and 50 mM potassium chloride, pH 2.2). One sample was not returned to 37°C nor subjected to an acid wash and served as a control for labeling efficiency. An additional sample was not returned to 37°C but was subjected to an acid wash and served as a control for antibody-stripping efficiency. Cells were then rinsed and processed for immunofluorescence. Internalization was quantified by measuring the fluorescence intensity after 10 min and normalizing to fluorescence intensity preendocytosis (labeling efficiency control). All measurements were made using ImageJ.
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4

Calcium Modulation of Cellular Signaling

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Four to six hours after plating, experimental manipulations were carried out by changing culture medium. Calcium influx was increased by depolarizing with elevated extracellular K+ - 25 mM (25K) or 50 mM (50K) - as previously described 33 (link),34 (link). To decrease calcium influx, calcium-free culture media was used, in which DMEM was substituted with calcium-free DMEM (Life Technologies) with 1mM EDTA. Cadmium (Sigma-Aldrich), a non-selective voltage-gated calcium channel blocker, was added into the medium to a final concentration of 10 μM. Nifedipine (Sigma-Aldrich), an L-type Ca2+ channel blocker, was added to a final concentration of 1 μM. To disturb calcium release from internal stores, application of 100 μM Ryanodine (Sigma-Aldrich) or 2 μM Xestospongin C (Sigma-Aldrich) was used to block Ryanodine-sensitive channels or inhibit inositol-1,4,5-trisphosphate (IP3) receptors, respectively.
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5

Cytokine Quantification in Cell Lines

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Dulbecco’s Modified Eagle Medium (DMEM), trypsin, and fetal bovine serum (FBS) were purchased from Welgene (Gyeongsan, Republic of Korea). Streptomycin–penicillin was purchased from Gibco (NY, USA). Calcium-free DMEM, superscript™ IV first-strand synthesis system, and Dream taq Green PCR Mix were purchased from Thermo Fisher Scientific (MA, USA). TRIzol reagent was purchased from Invitrogen (CA, USA). Sodium dodecyl sulfate (SDS), dithiothreitol (DTT), agarose, lipopolysaccharide (LPS), ethyl ether, 1,1-diphenyl-2-picrylhydrazyl (DPPH), Griess reagent, NG-Methyl-l-arginine acetate salt (L-NMMA), and thiazolyl blue tetrazolium bromide (MTT) were obtained from Sigma Aldrich (St. Louis, USA). Reagent set B, cytokine IL-6 and IL-8 ELISA sets used for immunoassay were purchased from BD Biosciences (NJ, USA). TI was acquired in a previous study [31 (link)].
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6

Evaluation of Anti-Inflammatory and Anti-Androgenic Effects

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Dulbecco’s Modified Eagle Medium (DMEM), fetal bovine serum (FBS) and trypsin were purchased from Welgene (Gyeongsan, Republic of Korea). Streptomycin-penicillin was purchased from Gibco (NY, USA). Calcium-free DMEM, superscriptTM Ⅳ first-stand synthesis system and dream taq Green PCR Mix were purchased from Thermo Fisher Scientific (MA, USA). Sodium dodecyl sulfide (SDS), dithiothreitol (DTT), agarose, lipopolysaccharide (LPS), phosphate-buffered saline (PBS), 1,1-Diphenyl-2-picrylhydrazyl (DPPH) and Griess reagent (0.1% naphthylethylenediamine and 1% sulfanilamide in 5% H3PO4 solution), NG-Methyl-L-arginine acetate salt (L-NMMA) and thiazolyl blue tetrazolium bromide (MTT) and Dutasteride were purchased from Sigma Aldrich (St. Louis, USA). Reagent set B, cytokine IL-6, IL-8 ELISA sets used for immunoassay were purchased from BD Biosciences (NJ, USA). The primary and secondary antibodies for 5α-reductase type 1 were purchased form Abcam (Cambridge, UK). PVDF membrane and Mini-protean precast gels and were purchased form Bio-Rad (Hercules, CA, USA). ECL detection reagent (GE Healthcare Life Science, NJ, USA).
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7

Quantifying Desmoplakin Peripheral Localization

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Cells seeded in BioFlex plates/Collagen I and subjected to cyclic strain or no strain. After that, cells were washed in calcium and magnesium-free Hanks’ balanced salt solution (14175053, HBSS, Gibco, Dartford, United Kingdom) briefly before being incubated in calcium-free medium (21068-028, calcium-free DMEM (Gibco) supplemented with 10% decalcified FCS plus 3 mM EGTA for 90 min, following the established protocol [35 (link)]. Control samples were cells incubated in growth medium with normal calcium concentration. Finally, all samples were fixed with 3.6% formaldehyde for 10 min only before processing for Dp immunofluorescence. The fluorescent staining of peripheral Dp was quantitated in ImageJ (NIH, Maryland, Washington D.C., USA).
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8

Pharmacological Modulation of VSMC

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For the experiments that required calcium-free conditions, calcium-free DMEM (GIBCO, NY, USA) was used. The chemical reagents 2-aminoethoxydiphenyl borate (2-APB) (0.1 mM) 36 and nifedipine (10 μM) 37 were purchased from Sigma-Aldrich (St. Louis, MO). GSK219 (0.1 mM) 38 (link) was obtained from Merck (NY, USA). All the drugs were preincubated with VSMCs for 20 min before the addition of the PMVs. The amount of drug administered was based on previous publications.
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9

Isolation and Culture of Mouse Bone Marrow-Derived Macrophages

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Mice were sacrificed and hind legs were removed and placed in conical tubes containing 5% FCS DMEM media (Gibco). Muscle was removed from tibia and femur bones and the ends of bones were cut off. Using a 271/2 gauge needle, 10 mL of sterile DMEM media supplemented with 10% FBS, pen/strep, and L-glutamine was passed through the bone. Cells were pelleted and plated with mouse MCSF (50 ng/mL) (BioLegend). Following 4 days of incubation, supernatant was removed and plated in a new dish. Cells were again incubated in media with mouse MCSF for 3 more days. Dishes were then washed 3 times with sterile PBS to remove unadhered cells. BMDMs were gently scraped off the dish, pelleted, counted, and seeded in new plates for experimentation. In the case of experiments with calcium-free medium, immediately prior to experimentation, cells were washed three times with PBS, before adding calcium-free DMEM (Gibco) with pen/strep and L-glutamine. Controls for calcium-free medium experiment were placed in calcium-sufficient DMEM with pen/strep and L-glutamine. In some experiments, cells were treated with DMOG (200 μM), GsmT×4 (5 μM), Brefeldin-A (3 μg/mL), recombinant EDN1 (conc), Bosentan (10 μM), Cyclosporine A (10 μM), SR 11302 (10 μM), Echinomycin (5 nm), Bapta-AM (10 μM), Chloroquine (100 μM) or MG132 (50 μM)
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10

Inducing EPEC Type III Secretion

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To induce EPEC T3S, preequilibrated regular Dulbecco's modified Eagle's medium (DMEM, Gibco, 12100‐046) was inoculated with 1/100 of an overnight (O/N) culture of LB and grown under static conditions at 37°C in a 5% CO2 atmosphere. At an optical density at 600 nm (OD600) of 0.8 to 1, the culture was centrifuged (19,800g for 10 min) to separate secreted proteins from the bacterial cells. The resulting pellet was resuspended in SDS‐PAGE sample buffer and normalized according to the OD600. The supernatant, containing secreted proteins, was precipitated overnight at 4°C with 10% trichloroacetic acid. Precipitated proteins were collected by centrifugation at 19,800g for 30 min, and protein pellets were resuspended in SDS‐PAGE sample buffer, normalized according to the OD600 and neutralized by adding a saturated Tris solution. Protein secretion profiles were analyzed by 15% SDS‐PAGE and immunoblotting. Calcium‐free DMEM (Gibco, 21068‐028) was used to evaluate the effect of calcium on the EPEC secretion profile. The calcium‐free DMEM solution was supplemented with L‐Glutamine and HEPES to a final concentration of 4 mmol/L and 100 mmol/L, respectively.
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