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Syto 24 green fluorescent nucleic acid stain

Manufactured by Thermo Fisher Scientific
Sourced in United States

SYTO 24 green fluorescent nucleic acid stain is a laboratory reagent used to stain nucleic acids, such as DNA and RNA, in biological samples. It exhibits green fluorescence upon binding to nucleic acids, allowing for the detection and visualization of these molecules using fluorescence-based techniques.

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8 protocols using syto 24 green fluorescent nucleic acid stain

1

Insulin Secretion and Staining Protocol

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Tissue and cell culture medium RPMI 1640 was obtained from GIBCO BRL (Paisley, UK). Guinea pig anti-porcine insulin antibody, mono-125I-(Tyr A14)-labeled human insulin, and porcine insulin were from Novo Nordisk (Bagsvaerd, Denmark). Collagenase P was obtained from Boehringer Mannheim GmbH (Mannheim, Germany) and Hanks’ balanced salt solution (HBSS), bovine serum albumin (BSA), and other chemicals were obtained from Sigma Chemical (St. Louis, MO, USA). ISV was purchased from Wako Pure Chemical Industries (Tokyo, Japan) and was added to the medium from a stock solution (10−2 M) prepared in 99% ethanol.
50 mM palmitic acid: palmitic acid (Sigma) was prepared by dissolving and heating equal molar amounts of NaOH, supplemented with distilled water, to obtain a concentration of 100 mM. It was further diluted with 10% BSA (fatty acid free) to 50 mM fatty acid, with 5% BSA. The stock solution was frozen at −20 °C until usage.
Modified Krebs-Ringer Buffer (M-KRB): 125 mM NaCl, 1.2 mM MgCl2, 5.9 mM KCl, 1.28 mM CaCl2, 25 mM 4-(2-hydroxyethyl)-1-piperazineethanesulfonic acid (HEPES), 5.0 mM NaHCO3 (pH 7.4; All Sigma). SYTO 24 solution: 5 mM SYTO 24 green fluorescent nucleic acid stain (molecular probes, Invitrogen, Eugene, OR, USA) in dimethyl sulfoxide was diluted to a final concentration of 0.01 mM.
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2

Fluorescent Staining of Cell Nuclei

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All chemicals were purchased from Sigma-Aldrich Denmark A/S if not stated otherwise.
Modified Krebs–Ringer Buffer (M-KRB): 125 mM NaCl, 5.9 mM KCl, 1.2 mM MgCl2, 1.28 mM CaCl2, 5.0 mM NaHCO3, 25 mM HEPES, 0.015 mM BSA, and 1 mM glucose (pH 7.4).
SYTO 24 solution: 5 mM SYTO 24 green fluorescent nucleic acid stain (molecular probes; Invitrogen, Eugene, OR, USA) was mixed with sterile water to reach a final concentration of 10 μM. PBS: Dulbecco’s phosphate-buffered saline (Gibco, Paisley, UK).
Incubation buffer for antibody staining: 10% FBS and 0.5% Triton X-100.
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3

H2O2-Induced Cytotoxicity and Infection Assay

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H2O2-induced cytotoxicity was analyzed using an IncuCyte Live Cell Imager (Sartorius, Goettingen, Germany) at Genome Engineering and iPSC Center at WUSM. The ratio of SYTOX Green Nucleic Acid Stain (1:10,000, S7020, Invitrogen) and SYTO 24 Green Fluorescent Nucleic Acid Stain (1:1000, S7559, Invitrogen) was reported over time, averaged over 4 independent fields in each well of a 96-well plate, with 4 technical replicates per time point. Infection-induced cytotoxicity was assessed using CellInsight CX5 High Content Screening (HCS) Platform with an on-stage incubator (maintained at 37°C, 5% CO2). Cells were stained with 1X HCS Nuclear Mask Staining (# H10325, Thermo Fisher) and 1 μM SYTOX AADvanced Dead Cell Stain Kit (# S10274, Thermo Fisher) in DMEM media supplemented with 1% P/S, 1% Glutamine and 10% FBS (CellInsight CX5 configuration: Assay Algorithm TargetActivation.V4. HCS Nuclear Mask (Channel 1) was detected by filter 386–23 and the SYTOX® AADvanced stain (Channel 2) was detected by filter 560–25). Cell viability was assessed by measuring total intensity of SYTOX staining. Values showed are mean ± SD of five replicate wells, which represents SYTOX total intensity of all pixels within an object. ***P < 0.001, N.S. not significant.
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4

Evaluating Viability of Lyopreserved and Cryopreserved Amniotic Membrane

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We evaluated a lyopreserved viable AM sample (GrafixPL PRIME®, Smith+Nephew, Columbia, Maryland) for cell viability and compared it with the cryopreserved viable AM (Grafix PRIME®, Smith+Nephew, Columbia, Maryland). For this study, three individual samples of cryopreserved and lyopreserved AM derived from three different donors were assessed for cell viability. Each 3 cm2 piece was cut into four sections. Each section was stained with SYTO 24 green fluorescent nucleic acid stain (Invitrogen, Thermo Fisher Scientific, Waltham, Massachusetts) staining viable cells and Ethidium Homodimer‐1 red fluorescent dye (Invitrogen, Thermo Fisher, Waltham, Massachusetts) staining dead cells. Stained samples were analysed using fluorescent microscopy. Imaging was performed for 10 microscopic fields for each section at 5× and 10× magnification for viable and non‐viable cells (in green and red fluorescent channels, respectively). Images of viable and non‐viable cells were overlapped and blindly assessed using a semiquantitative scale: non‐viable, <50% viable, ~50% viable, or >50% viable; representative images shown in Figure 1.
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5

Cell Migration Assay with Fluorescent Stains

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Oris™ 96-well migration kits (CMA1.101) were purchased from Platypus Technologies (Madison, WI). CellTrace Far Red (C34572), CellTrace Violet (C34557), and SYTO 24 Green Fluorescent Nucleic Acid Stain (SYTO 24) (S7559) were purchased from ThermoFisher Scientific (Waltham, MA).
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6

Enrichment and Staining of Epithelial Cells

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Cells were harvested from culture flasks using a solution of 0.25% Trypsin, 1 mM EDTA for approximately five minutes. After the cells had detached from the culture flask, the trypsin was immediately neutralized with buffer solution containing at least 10% FBS. Cells were then washed in a centrifuge at 200 g for five minutes, and then resuspended at an appropriate concentration in solution of HBSS supplemented with 2% BSA and 5 mM EDTA. Cells were magnetically labeled with CD326 (EpCAM) microbeads (130–061-101, MACS-dextran ferrite colloids beads with a diameter of 50 nm, purchased from Miltenyi Biotec); beads were added to all cell suspensions at a 20% concentration by volume. For experiments requiring optical profiling of the cells, Syto 24 green fluorescent nucleic acid stain (S7559, ThermoFisher) was added to the cell suspension at a concentration ≥1 µl/ml. Artificial clusters were generated by letting the unlabeled cells stand for 30 minutes until they aggregated.
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7

Visualizing Parasite Nucleic Acids

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Parasites were washed with 1× phosphate-buffered saline (PBS; VWR) and mixed with 40% glycerol solution (vol/vol) in 1× PBS on poly-l-Lys-coated coverslips (Thermo Fisher Scientific). Slides were stained with SYTO 24 green fluorescent nucleic acid stain (Thermo Fisher Scientific), and cells were observed with an Olympus BX-53 microscope (Olympus, Tokyo, Japan) equipped with an Olympus DP73 digital camera. Images were taken with Olympus cellSens v.1.6 software, and merging was done in ImageJ v.1.51n (109 (link)).
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8

Microscopic Examination of Trypanosomatid Cells

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The trypanosomatid cells on Giemsa-stained smears were photographed using DM 2500 Leica microscope and measured with Fiji software [67 (link)]. For fluorescent microscopy, cells from either 3-day-old culture or the intestinal contents of flies infected 3 days before were centrifuged, fixed with 4% paraformaldehyde in phosphate-buffered saline (PBS) for 30 min, rinsed with PBS, attached to poly-L-lysine-coated slides, permeabilized with 1% Triton X-100, and blocked with 1% Bovine Serum Albumin (Sigma-Aldrich). For the visualization of axonemes, primary mouse monoclonal anti-α-tubulin and secondary anti-mouse IgG-TRITC goat antibodies (1:500 and 1:100, respectively; both from Sigma-Aldrich) were used. After washing with PBS and staining with either DAPI (4′,6′-diamidino-2-phenylindole; Sigma-Aldrich) or SYTO24 Green Fluorescent Nucleic Acid stain (Thermo Fisher Scientific), slides were observed under Leica DM2500 fluorescent microscope. The samples from cultures and midguts of infected flies were prepared and processed for scanning and transmission electron microscopy as described previously [8 (link), 68 (link), 69 (link)].
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