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Phrodo se

Manufactured by Thermo Fisher Scientific
Sourced in United States

The PHrodo-SE is a fluorescent pH indicator used for measuring pH changes in biological systems. It is a pH-sensitive dye that undergoes a change in fluorescence intensity in response to variations in pH levels. The core function of the PHrodo-SE is to provide a quantitative measure of pH within a sample.

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7 protocols using phrodo se

1

Quantifying Phagocytosis of Tumor Debris

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PTX-induced tumor cell debris was stained with 1 μL of 1 mg/mL pHrodo-SE (Thermo Fisher Scientific, Waltham, MA, USA) for 30 min at room temperature. BMDMs were co-cultured with pHrodo-SE-labeled tumor cell debris. After incubation for 8 h, the phagocytic activity of BMDMs was assessed by flow cytometry or confocal microscopy.
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2

Quantifying Phagocytosis of Apoptotic Cells

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Uptake of apoptotic cells by peritoneal MΦres was assessed as previously described (34 (link)). Briefly, thymocytes were collected from naive animals by mincing thymi through 2 μm gauze until completely homogenized. Erythrocytes were removed by incubating with red blood cell lysis buffer (Sigma-Aldrich). Thymocytes were resuspended at 1x10^7 cells/mL in complete DMEM and incubated in the presence of 0.1 µM dexamethasone (Sigma-Aldrich) at 37°C for 18 h. This produced >90% apoptosis, as assessed by Viastain AO/PI staining measured on a Cellometer ® Auto 2000 Cell Counter (Nexcelom Bioscience). Subsequently, apoptotic thymocytes were washed twice with PBS and resuspended in PBS at 10^6 cells/mL containing 40 ng/mL pHrodo-SE (Thermo Fisher Scientific) and incubated at RT for 30 min. Thereafter the cells were washed twice with PBS and resuspended in RPMI containing 5% foetal bovine serum, 2 mM L-glutamine, 100 U/mL penicillin and 100 μg/mL streptomycin. Unstained apoptotic cells served as staining control.
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3

Phagocytosis of Apoptotic Thymocytes by BMDMs

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Thymocytes were isolated from 3- to 6-week-old C57BL/6 mice. Thymocytes were incubated for 4 hr with 1 μg/ml of dexamethasone (Sigma-Aldrich D4902) to induce apoptosis. In parallel, BMDMs from the indicated mice were collected and replated to adhere for 3 hr at 37°C. Apoptotic thymocytes, pre-labeled with 0.1 mg/ml of pHrodo-SE (Thermo Fisher P36600), were subsequently added to BMDMs at 6:1 ratio. Cells were co-cultured for 1 hr at 37°C. Afterward, the apoptotic thymocyte-containing media were removed and BMDMs were washed five times with 1× PBS. Adherent BMDMs were then treated with Accutase (Sigma-Aldrich A6964) for 10 min at 37°C. BMDMs were then gently scraped off for collection and stained for analysis with flow cytometry.
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4

Phagocytic Assay with Functionalized Beads

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Strepavidin-coated polystyrene microparticles (5.0–5.9-μm diameter, Spherotech) were sterilized for 20 min in 70% isopropanol. Beads were spun down and resuspended in 0.1 M sodium bicarbonate buffer (pH 8.5) and labeled with 10 μM pHrodo SE (Thermo Fisher) for 30 min in the dark. Beads were spun down to remove free dye and resuspended in 0.1 PB (pH 6.5). Biotinylated proteins from ACROBiosystems were added to the beads at a concentration sufficient to occupy one quarter of the binding sites. Beads were incubated with protein for 1 h, washed and resuspended in PBS for use in experiments.
UTD or CAR macrophages were thawed and plated at a density of 2 × 104 viable cells per well in a 96-well plate and allowed to adhere overnight. The next day, the media was aspirated and previously functionalized or blank beads in TexMACS and 10% FBS were added to obtain a 5:1 bead-to-cell ratio. Changes in fluorescence were monitored with IncuCyte Live-Cell Analysis System (Essen BioScience). The phagocytic index was calculated by subtracting the red image mean of wells containing only beads from that of wells with cells and beads and then dividing by the red image mean of the bead-only wells.
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5

Preparation of Reagents for Cell Imaging

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DCPIB (Tocris), NPPB (Tocris), FFA (Sigma), Cytochalasin D (Sigma) and Calcein‐AM (Biolegend) were obtained as powders dissolved in DMSO to ×200 concentrated stocks and stored at −20°C. pHrodo‐SE (ThermoFisher) was dissolved in DMSO to 10 mg/ml and stored in aliquots at −80°C. Human Aβ1‐42 (Eurogentec) was dissolved in hexafluoro‐2‐propanol, dried into films under a rotary evaporator (Eppendorf) and stored at −80°C. Tomato lectin conjugated to DyLight 594 (Vector Biolabs) was washed twice through a centrifugal filter (10 kDa MWCO) to remove sodium azide, sterile filtered and stored as a 1 mg/ml stock at 4°C.
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6

Serum-Mediated Modulation of Apoptotic Cell Phagocytosis

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To assess the influence of serum components in ApoCell-phagocytosis, apoptotic cells were pre-treated (for 15-min at 37°C) with DMEM culture medium alone, with whole serum or with purified IgG preparations (50 µg/ml) derived from autoimmune patients or HBD. Apoptotic cells were washed and incubated (1×106 cells) with preparations of isolated peripheral blood mononuclear cells (1×106 cells) or MDM (1×105 cells) derived from a healthy donor, and the samples were analyzed for ApoCell-phagocytosis, as above. In separate experiments, prior the addition to mixtures, serum samples from HBD were heat-inactivated (56°C, 30-min) to destroy complement. The rates of ApoCell-phagocytosis by healthy MDM of apoptotic cells pretreated with purified IgG preparations (50 µg/ml) derived from either autoimmune patients or HBD were also comparatively investigated by two-color flow cytometry analyses of healthy MDM stained with CD14-PE (BD-Pharmingen) and CFSE-labelled IgG-pretreated apoptotic cells, as well as by single-color flow cytometry using apoptotic cells labelled with the pH-sensitive fluorescent dye pHrodo succinimidyl ester (pHrodo-SE, Life Technologies, 20 ng/ml at room temperature for 30-min), which allows the actual detection of ingested apoptotic cells owing to increased light emission in the acidic environment of the phagosomes of phagocytes [27] (link).
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7

Multiparametric Phagocytosis Profiling

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Labeling was performed as previously published (23 ). Briefly 2×1010/mL of heat-killed (80°C 1hr) HB101 E.coli were sequentially labeled with 500uM DCF-SE to detect ROS, 50uM pHrodo-SE to detect pH changes, and 159uM Alexafluor-350-SE to calibrate DCF/pHrodo fluorescence (Life Technologies). Labeling was performed in PBS pH 9.0, degassed and purged with N2 to minimize auto oxidation of DCF. ~1.5×1010/mL bacteria were opsonized with 1/10th volume of normal mouse plasma (heparinized) and anti-E.coli antibodies (50ug/mL) (Life Technologies). The use of particles covalently labeled with multiple fluorescent indicators/substrates provides temporal, spatial, and calibrated information for phagocytosis and phagosomal events that are not readily available with most cell permeable dyes. These approaches have been validated in previous publications (24 (link), 25 (link)).
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