The largest database of trusted experimental protocols

11 protocols using adenoviral vector

1

Generating Adenoviral Vectors for Hspa12a and Aoah

Check if the same lab product or an alternative is used in the 5 most similar protocols
The adenoviral vector containing a three flags-tagged coding region of mouse Hspa12a (NM_175199) was generated by GeneChem (Shanghai, China) as described in our previous studies [16 (link), 17 (link)]. The adenoviral vector containing a three flags-tagged coding region of mouse Aoah (NM_012054) was generated by GeneChem (Shanghai, China). A schematic overview of Aoah virus construction is shown in Supplementary Fig. S4.
+ Open protocol
+ Expand
2

Overexpressing HSPA12A in HUVECs

Check if the same lab product or an alternative is used in the 5 most similar protocols
To overexpress HSPA12A (Hspa12ao/e) in HUVECs, cells were infected with adenovirus that carrying the Hspa12a expression coding sequence as our previous methods [19 (link), 20 (link), 23 (link)]. The adenoviral vector containing the 3 Flag-tagged mouse Hspa12a coding region (NM_175199) was generated by GeneChem Company (Shanghai, China). The scheme of virus construction is shown in Figure S1. The cells infected with empty adenovirus served as normal controls (NC).
For p38 or ERK inhibition, SB203580 (20 μM) or PD98059 (25 μM) were introduced to cell cultures 24 h after HSPA12A overexpression.
+ Open protocol
+ Expand
3

Silencing EPOR, SIRT1, and PPARγ in HepG2 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To knockdown EPOR in HepG2 cells, cells were infected with an adenoviral vector expressing an EPOR short hairpin RNA (shRNA) sequence (Genechem, Shanghai, China) or an AdCMV-GFP control vector (Genechem) for 48 h prior to treatment with PA or EPO. To silence SIRT1 or PPARγ gene expression, HepG2 cells were transfected with siRNA against SIRT1 or PPARγ (GenePharma, Shanghai, China) using Lipofectamine 2000 (Invitrogen, Grand Island, NY, USA) according to the manufacturer’s guidelines. Luciferase siRNA (FAM) was used as a control. The siRNA oligonucleotides are as follows: SIRT1, 5′-GCGGGAAUCCAAAGGAUAATT-3′; PPARγ, 5′-ACUCCACAUUACGAAGACATT-3′; AMPKα, 5′-CCACUCUCCUGAUGCAUAUTT-3′; LKB1, 5′-CCUGCUGAAAGGGAUGCUUTT-3′; and negative control FAM, 5′-UUCUCCGAACGUGUCACGUTT-3′. If indicated, 0.3 mmol/l PA and 10 U/ml EPO were added 36 h post-transfection.
+ Open protocol
+ Expand
4

Adenoviral Vector-Mediated Gene Manipulation

Check if the same lab product or an alternative is used in the 5 most similar protocols
To make Ad-KLF5 and Ad-GFP as describing previously [13 (link)]. To infect Hela cells with an Adenoviral vector (Genechem Co., Ltd). To achieve RNAi-mediated depletion of Eppk1, we transfected cells with siRNA oligos targeting Eppk1 (si-Eppk1) or negative controls (si-Con) (Genechem Co., Ltd). In this process, we also used the Lipofectamine 2000 reagents (Invitrogen; Thermo Fisher Scientific, Inc.) according to the instructions.
+ Open protocol
+ Expand
5

Immuno-Detection of Eppk1 and KLF5 in Cervical Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ad-KLF5 and Ad-GFP were made as described previously [13] . Hela cells were infected with Adenoviral vector (Genechem Co., Ltd). To achieve RNAi-mediated depletion of Eppk1, we transfected cells with siRNA oligos targeting Eppk1 or negative controls (Genechem Co., Ltd). In this process, we also used the Lipofectamine 2000 reagents (Invitrogen; Thermo Fisher Scienti c, Inc.) according to the operation instructions.
Immuno uorescence staining.
All cervical tissue samples were xed by 4% paraformaldehyde solution, the xed tissue was dehydrated by ethanol, transparent by xylene, embedded in para n, and the sections were 4 μm. The above samples were operated by indirect immuno uorescence method according to the instructions. rabbit anti-KLF5
(1:50, GTX103289, GeneTex) and mouse anti-Eppk1 (1:50, sc-87102, Santa) were incubated overnight at 4℃, Fluorescein labeled uorescent secondary antibody, Rhodamine labeled uorescent secondary antibody (KPL) and DAPI (Sigma) nuclear staining. Image Pro-Plus6.0 (Media Cybernetics, Inc, USA) Image analysis software analyzed the uorescence intensity of Eppk1 and KLF5 expressions.
+ Open protocol
+ Expand
6

Adenoviral-Mediated Eppk1 Knockdown

Check if the same lab product or an alternative is used in the 5 most similar protocols
Ad-KLF5 and Ad-GFP were made as described previously [13] . Hela cells were infected with Adenoviral vector (Genechem Co., Ltd). To achieve RNAi-mediated depletion of Eppk1, we transfected cells with siRNA oligos targeting Eppk1 or negative controls (Genechem Co., Ltd). In this process, we also used the Lipofectamine 2000 reagents (Invitrogen; Thermo Fisher Scienti c, Inc.) according to the operation instructions.
+ Open protocol
+ Expand
7

Ad-KLF5 and Ad-GFP Infection and Eppk1 RNAi in HeLa Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
To make Ad-KLF5 and Ad-GFP as describing previously [13] . To infect Hela cells with an Adenoviral vector (Genechem Co., Ltd). To achieve RNAi-mediated depletion of Eppk1, we transfected cells with siRNA oligos targeting Eppk1 (si-Eppk1) or negative controls (si-Con) (Genechem Co., Ltd). In this process, we also used the Lipofectamine 2000 reagents (Invitrogen; Thermo Fisher Scienti c, Inc.) according to the instructions.
+ Open protocol
+ Expand
8

Culturing and Manipulating Cervical Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Human normal cervical epithelial cell (HcerEpic) and human cervical (HeLa, SiHa and C33A) cancer cell lines were purchased from the Cell Culture Center (Manassas, VA). And containing RPMI 1640 medium containing 10% fetal bovine serum, 5% carbon dioxide, 37℃ constant temperature incubator, logarithmic growth phase cells were used for the following experiments.
Adenoviral vector, siRNA and transfection Ad-KLF5 and Ad-GFP were made as described previously [13] . Hela cells were infected with Adenoviral vector (Genechem Co., Ltd). To achieve RNAi-mediated depletion of Eppk1, we transfected cells with siRNA oligos targeting Eppk1 or negative controls (Genechem Co., Ltd). In this process, we also used the Lipofectamine 2000 reagents (Invitrogen; Thermo Fisher Scienti c, Inc.) according to the operation instructions.
+ Open protocol
+ Expand
9

Adenoviral Vector-Mediated Cardiac Gene Delivery

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following were inserted into adenoviral vectors according to the manufacturer's instructions (GeneChem): the full‐length rat lncRNA H19 sequence (Ad‐H19) to ensure H19 expression, a short‐hairpin RNA (Ad‐shH19) directed against lncRNA H19 and the associated negative control oligonucleotides. Recombinant adenoviruses for miR‐22‐3p overexpression (Ad‐miR‐22) and miR‐22‐3p silencing (Ad‐Antagomir‐22), as well as their negative control, were also constructed by GeneChem. The adenovirus encoding KDM3A (Ad‐KDM3A), which has been verified to be efficient in inducing the overexpression of KDM3A in vivo,15 was provided by GeneChem as well, and Ad‐GFP was used as a control.
Five days before the establishment of the AMI model, rats were anaesthetized, and the pericardium was removed through a small left anterior thoracotomy. Then, 100 µL of adenovirus solution was intramyocardially injected into five separate sites of the left ventricle by using a microsyringe. Five days later, the rats that survived were subjected to AMI surgery.
+ Open protocol
+ Expand
10

Investigating Organelle-Specific Autophagy Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies against Drp1, p62, LC3, RIP1, RIP3, TSG101, and CD63 were purchased from Abcam (Cambridge, MA, USA). β-actin, tubulin, and COX IV, which were used as references for the total, cytoplasmic, and mitochondrial fractions, were also acquired from Abcam (Cambridge, MA, USA). Antibodies against Phospho-RIP3 (Thr231/Ser232) and Phospho-Drp1 (Ser616) were purchased from Cell Signaling Technology (Danvers, MA, USA). The Aggresome Detection Kit was acquired from Abcam (Cambridge, MA, USA). MitoTracker Deep Red, the ROS 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA) kit, dihydroethidium (DHE) assay kit, and MitoSOX detection kit were purchased from Invitrogen (Carlsbad, CA, USA). Ad-mRFP-GFP-LC3 was supplied by Beyotime (Shanghai, China). Adenoviral vectors for Drp1 short hairpin RNA (shRNA) and Drp1 mutations (Drp1-S616D and Drp1-S616A) were generated by Genechem Technology (Shanghai, China). Related activators and inhibitors, including Mitochondrial division inhibitor 1 (Mdivi-1), N-acetylcysteine (NAC), and Necrostatin-1 (Nec-1), were obtained from Selleck (Shanghai, China). The Protein A/G Magnetic Beads IP Kit was purchased from Thermo Scientific (Waltham, MA, USA), and fetal bovine serum (FBS) and penicillin/streptomycin were procured by Invitrogen (Carlsbad, CA, USA). All other chemicals were supplied by Sigma unless otherwise specified.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!