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Api 6500 q trap lc ms ms system

Manufactured by AB Sciex
Sourced in United States, Canada

The API 6500 Q TRAP LC/MS/MS System is a high-performance liquid chromatography-tandem mass spectrometry (LC-MS/MS) instrument. It is designed for sensitive and selective analysis of a wide range of analytes in complex samples.

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28 protocols using api 6500 q trap lc ms ms system

1

Quantification of Plant Hormones by LC-MS/MS

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An API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6 software (AB Sciex), was used. The ESI source operation parameters were as follows: ion source, turbo spray; source temperature, 500 °C; ion spray voltage, 5,500 V; curtain gas set at 35.0 psi; and the collision gas was medium. DP and CE values for individual MRM transitions were established by further optimization. A specific set of MRM transitions were monitored for each period based on the plant hormones eluted within the period.
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2

Carotenoid Profiling in Plant Leaves

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Given that carotenoids are precursors of ABA synthesis, the carotenoid composition in the leaves of the four treatments was detected. Carotenoid extracts were analyzed using an LC-APCI-MS/MS system (UHPLC, ExionLCTM AD; MS, Applied Biosystems 6500 Triple Quadrupole). A YMC C30 column (3 μm, 100 mm × 2 mm) was used for HPLC analysis. The experiments were performed at 28°C with a flow rate of 0.8 mL/min. The mobile phase consisted of solvent A, i.e., methanol: acetonitrile (1:3, v/v) containing 0.01% BHT and 0.1% formic acid, and solvent B (methyl tert-butyl ether with 0.01% BHT). The gradient program was as follows: 0% B (0–3 min), increased to 70% B (3–5 min), then increased to 95% B (5–9 min), and finally ramped back to 0% B (11–12 min). MS analysis was carried out using the API 6500 + Q TRAP LC-MS/MS System, equipped with an APCI Turbo Ion-Spray interface, operating in positive ion mode and controlled by Analyst 1.6.3 software (AB Sciex).
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3

Quantitative Mass Spectrometry of Metabolites

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Linear ion trap (LIT) and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6 software (AB Sciex). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500°C; ion spray voltage (IS) 5500 V; ion source gas I (GSI), gas II (GSII), and curtain gas (CUR) were set at 55, 60, and 25 psi, respectively; the collision gas (CAD) was high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. Based on the self-built database MetWare Database (http://www.metware.cn/) and metabolite information in public database, the materials were qualitatively analyzed according to the secondary spectrum information and the isotope signal was removed during the analysis. QQQ scans were acquired as multiple reaction monitoring (MRM) experiments with collision gas (nitrogen) set to 5 psi [28 (link)]. Declustering potential (DP) and collision energy (CE) for individual MRM transitions were done with further DP and CE optimization [27 (link)]. A specific set of MRM transitions were monitored for each period according to the metabolites eluted within this period.
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4

Metabolite Analysis of Mutant and WT Leaves

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Fresh leaves from mutant sr and WT were harvested at 0 and 12 hpi, weighed, immediately frozen in liquid nitrogen, and stored at −80 °C. Sample extracts were analyzed using an LC-ESI-MS/MS system (HPLC, Shim-pack UFLC SHIMADZU CBM30A system, www.shimadzu.com.cn/; MS, Applied Biosystems 6500 Triple Quadrupole) and an API 6500 QTRAP LC/MS/MS system (AB Sciex, USA)40 (link).
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5

Mass Spectrometry Protocol for Metabolite Analysis

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Mass spectrometry followed the method of Chen et al. [13 (link)]. LIT and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6.3 software (AB Sciex, Waltham, MA, USA). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500 °C; ion spray voltage (IS) 5500 V; ion source gas I (GSI), gas II (GSII), and curtain gas (CUR) were set at 55, 60, and 25.0 psi, respectively; the collision gas (CAD) was high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. QQQ scans were acquired as MRM experiments with collision gas (nitrogen) set to 5 psi. DP and CE for individual MRM transitions was done with further DP and CE optimization. A specific set of MRM transitions were monitored for each period according to the metabolites eluted within this period.
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6

Quantitative Mass Spectrometry Protocol

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LIT and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6.3 software (AB Sciex). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500 °C; ion spray voltage (IS) 5500 V; ion source gas I (GSI), gas II (GSII), the curtain gas (CUR) settings were set at 55, 60, and 25.0 psi, respectively; the collision gas (CAD) was high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. QQQ scans were acquired as MRM experiments with the collision gas (nitrogen) set to 5 psi. DP and CE for individual MRM transitions was done with further DP and CE optimization. A specific set of MRM transitions were monitored for each period according to the metabolites eluted within this period.
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7

Quantitative Analysis of Metabolites

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Subsequently, LIT and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in positive ion mode and controlled by Analyst 1.6 software (AB SCIEX). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500 °C; ion spray voltage 5500 V; ion source gas I, gas II, and curtain gas, 55, 60, and 25.0 psi, respectively; and collision gas, high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. The QQQ scans were acquired as MRM experiments with collision gas set to 5 psi. The DP and CE for individual MRM transitions were performed with further DP and CE optimization. A specific set of MRM transitions was monitored for each period according to the metabolites eluted within the period.
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8

Quantitative Metabolite Analysis via Triple Quadrupole MS

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LIT and triple quadrupole (QQQ) scans were acquired on a triple quadrupole-linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6.3 software (AB Sciex, Framingham, MA, USA). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500 °C; ion spray voltage (IS) 5500 V; ion source gas I (GSI), gas II (GSII), and curtain gas (CUR) were set at 55, 60, and 25.0 psi, respectively; the collision gas (CAD) was high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. QQQ scans were acquired as MRM experiments with collision gas (nitrogen) set to 5 psi. DP and CE for individual MRM transitions were performed with further DP and CE optimization. A specific set of MRM transitions were monitored for each period according to the metabolites eluted within this period.
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9

Extraction and LC-MS Analysis of Plant Metabolites

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Plant materials were ground into powder in liquid nitrogen, and extracted with methanol/water (8/2) at 4 °C. The extract was centrifuged at 12,000 g under 4 °C for 15 min. The supernatant was collected and evaporated to dryness under nitrogen gas stream, and then reconstituted in methanol/water (3/7). The solution was centrifuged and the supernatant was collected for LC-MS analysis. The LC-MS analysis was conducted with the API6500 Q TRAP LC/MS/MS system, equipped with an ESI Turbo Ion-Spray interface, operating in a positive ion mode and controlled by Analyst 1.6 software (AB Sciex).
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10

Targeted Metabolomics by Mass Spectrometry

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Mass spectrometry followed the method of Chen et al. [50 (link)]. Linear ion trap (LIT) and triple quadrupole (QQQ) scans were acquired on a triple quadrupole–linear ion trap mass spectrometer (Q TRAP), API 6500 Q TRAP LC/MS/MS System, equipped with an ESI Turbo Ion-Spray interface, which was operated in both positive and negative ion mode and controlled via Analyst 1.6 (AB Sciex). The ESI source operation parameters were as follows: ion source, turbo spray; source temperature 500 °C; ion spray voltage (IS) 5500 V; ion source gas I (GSI), gas II(GSII) and curtain gas (CUR) were set at 55, 60, and 25.0 psi, respectively. The collision gas (CAD) was high. Instrument tuning and mass calibration were performed with 10 and 100 μmol/L polypropylene glycol solutions in QQQ and LIT modes, respectively. QQQ scans were acquired as multiple reaction monitoring (MRM) experiments with collision gas (nitrogen) set to 5 psi. Declustering potential (DP) and collision energy (CE) for individual MRM transitions were done with further DP and CE optimization. A specific set of MRM transitions was monitored for each period according to the metabolites eluted within this period.
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