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11 protocols using mir 124 mimic

1

Capn4 Overexpression and miR-124 Regulation

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The pcDNA-Capn4 and pcDNA-control were purchased from Thermo Fisher Scientific. We purchased miR-124 mimics, anti-miR-124, and miR-control from GenePharma (Shanghai, China). Cell transfection was performed using Lipofectamine 2000 (Thermo Fisher Scientific).
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2

Regulation of SPRY2 and MMP-2 in SRA01/04 cells

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Short hairpin RNA (shRNA) targeting SPRY2 (shSPRY2; 10 nM; 5′-CCUUACCAUUCCUCCACUUTT-3′), shRNA targeting MMP-2 (shMMP-2; 10 nM; 5′-GCUGACCUGGAAGAGAACATT-3′) and their negative control (shNC; 10 nM; 5′-UUCUCCGAACGUGUC-3′), miR-124 mimics (10 nM; 5′-AACAUUCAACGCUGUCGGUGAGU-3′), NC mimics (10 nM; 5′-UUCUCCGAACGUGUCACGUTT-3′), miR-124 inhibitor (10 nM; 5′-ACUCACCGACAGCGUUGAAUGUU-3′) and NC inhibitor (10 nM; 5′-CAGUACUUUUGUGUAGUACAA-3′) were purchased from Shanghai GenePharma Co., Ltd. Cell transfection was performed in SRA01/04 (1×105 cells/well) using Lipofectamine® 2000 reagent (Invitrogen; Thermo Fisher Scientific, Inc.) for 48 h at 37°C according to the manufacturer's instructions. The full-length of SPRY2 and MMP-2 were subcloned into pcDNA3.1 (10 nM; Shanghai GenePharma Co., Ltd.) to overexpress SPRY2 and MMP-2 levels with empty pcDNA3.1 (10 nM; Shanghai GenePharma Co., Ltd.) serving as the control. The efficiency of transfection was determined in each experiment using reverse transcription-quantitative (RT-q)PCR 48 h post-transfection. Subsequent experiments were performed at 48 h post-transfection.
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3

Transfection of Liver Cancer Cells

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Negative control (NC), circHIPK3 siRNAs (si-circHIPK3), NC mimics, miR-124 mimics, and miR-506 mimics were chemically synthesized by GenePharma (Shanghai, China). Empty vector, circHIPK3 overexpression plasmid and PDK2 overexpression plasmid were obtained from HanBio Biotechnology (Shanghai, China). Based on the experimental purpose, HepG2 and SMMC-7721 cells were transfected with these plasmids or oligonucleotides using Lipofectamine 3000 (Invitrogen) for 48 h by referring to the reagent instructions [30 ]. This assay was repeated three times.
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4

Optimization of miRNA Mimics and Inhibitors

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The mimics control with scrambled sequence, miR-106a mimics, miR-106b mimics, miR-124 mimics, inhibitor control with scrambled sequence, miR-106b inhibitor, miR-124 inhibitor, miR-22 inhibitor, and miR-29b inhibitor were purchased from GenePharma (GenePharma Co., Ltd., Shanghai, China). Transfection of miRNA mimics/inhibitor or their corresponding control (20 nM) was performed using the HiPerFect Transfection Reagent (Qiagen) according to the manufacturer’s instruction.
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5

MiR-124 and Foxq1 RNA Transfection

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MiR-124 mimics, miR-Ctrl, Foxq1 siRNAs and Foxq1-Ctrl were synthesized from Gene-pharma (Shanghai, China). RNA oligonucleotides were transfected by lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA).
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6

Transient Transfection of miR-124 and AKT

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All transient transfections were carried out using Lipofectamine 2000 reagent (Invitrogen, Carlsbad, CA, USA) as described previously according to the manufacturer's protocol. Transient transfection of miR-124 mimics, miR-124 inhibitor, scramble, pc-DNA3.1(+)-AKT1, and pc-DNA3.1(+)-AKT2 plasmids were obtained from Shanghai GenePharma Co., Ltd (Shanghai, China) and were transfected at a final concentration of 20 nM with Lipofectamine 2000 according to the manufacturer's protocol. After 48 h of miRNA transfection, the cells were harvested for further studies. miR-124 mimics: 5′-UAAGGCACGCG GUGAAUGCCCAUUCACCGCGUGCCUUAUU-3′; miR-124 inhibitor: 5′-GGCAUUCACCGCGUGCCUUA-3′.
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7

Immune Response Regulation by miR-124

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MiR-124 mimic were purchased from GenePharma. The following Flowcytometry antibodies were purchased from BD Biosciences (USA), such as FITC-CD4 (L3T4, 553729), APC-CD25 (PC61.5, 557192), PE-IL-17 (TC11-18H10, 559502), PE-cy7-IFN-γ (XMG1.2, 561040), PE-FOXP3 (FJK-16S, 560408) and isotype controls. Antibodies for RORγ (562197) were purchased from BD Bioscience. FITC Annexin V Apoptosis DetectionKit I (2293683) was purchased from BD Pharmingen. anti-T-bet (Invitrogen,14-5825-82), anti-STAT3(cell signaling technology, 4368), anti-pSTAT3 (Cell Signaling Technology, 4074), ago2 antibody (proteintech, 10686-1-AP), and anti-actin (Sigma, A5441) antibodies for western blotting were used according to the manufacturers’ instructions. Secondary antibodies were from Santa Cruz Biotechnology, Inc.
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8

Nanoparticle-mediated miR-124 delivery

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Mal-PEG-PLGA (maleimide-poly(ethylene glycol)-poly(lactic-co-glycolic acid)), MePEG-PLGA, and PLGA were purchased from Jinan Daigang Biomaterial Co., Ltd. Spermidine and DiR (1,1′-dioctadecyl-3,3,3′,3′-tetramethylindotricarbo-cyanine iodide) were purchased from Sigma-Aldrich (St. Louis, MO). RVG29-Cyspeptide and PLGA-maleimide (MAL) were purchased from Changchun Xinjinji Biological Technology Co., Ltd. The miR-124 mimic was purchased from Shanghai GenePharma Co., Ltd.
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9

Regulation of SND1-IT1 and COL4A1 in Gastric Cancer

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Two pcDNA3.1 constructs containing human SND1-IT1 full-length complementary DNA (cDNA) and COL4A1 cDNA, an anti-SND1-IT1 siRNA construct, miR-124 mimic, and miR-124 inhibitor and introduced into HGC-27 cells alone or in combination as required by using lipofectamine 2000 reagents in accordance with the instructions provided by the manufacturer (Invitrogen, USA). Forty-eight hours after transient transfection, HGC-27 cells were stimulated with exogenous TGF-β1 (2 ng/mL, Sigma Chemical, Aldrich Ltd.) for 24 h. All constructs, miR-124 mimic, miR-124 inhibitor, and their corresponding NC were synthesized by GenePharma (Shanghai, China).
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10

Transfection of miR-124 and AKT2 siRNA in A549 and H1299 cells

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A549 and H1299 cells were seeded in the 6-well plates. When the cell intensity reached 60%, we replaced the medium with 1.5 ml fresh serum-free RPMI-1640 medium for 2 h and then 250 μl serum-free medium containing 5 μl Lipofectamine 2000 transfection reagents or 5 μl siRNA /microRNA (50 nmol per well) were mixed for 15 min at room temperature. Later, the above mixture was added into 6-well plates. Six hours later, the cell supernatant was changed with 2 ml medium with 10%FBS. After 48–72 h transfection, the cells were collected for further experiments. MiR-124 mimic and negative control were purchased from GenePharma (Shanghai, China). The siRNAs specific for AKT2 were provided by Shanghai GenePharma Company. The target sequences of the siRNAs were as follows: siRNA-AKT2–1: 5′-GCUCCUUCUAUUGGGUACAATT-3′, siRNA-AKT2–2: 5′-GCGGAAGGAAGUCAUCAUUTT-3′, and siRNA-AKT2–3: 5′-GGUUCUUCCUCAGCAUCAATT-3′.
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