The largest database of trusted experimental protocols

8 protocols using mab5428

1

Immunohistochemistry of RPE-like Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry, the cells were initially fixed in 4% paraformaldehyde
(Sigma) for 20 min, followed by permeabilization with 0.3% Triton-X 100 for 5
min at room temperature. Next, the cells were incubated with 10% sheep serum for
30 min at 37°C for protein blocking. To characterize the differentiated RPE-like
cells, the following primary antibodies were used: RPE65 (MAB5428, 1:100; Merck,
Darmstadt, Germany), CRALBP (ab1501, 1:100; Abcam, Cambridge, UK), and zonula
occludens-1 (ZO-1, LS-B9774, 1:100; LifeSpan BioSciences, Seattle, WA, USA). The
incubation with primary antibodies was conducted at 4°C overnight, followed by
incubation with FITC-conjugated secondary antibodies at room temperature for 1
h. The ARPE19 cells served as a positive control.
+ Open protocol
+ Expand
2

Immunostaining of Retinal Sections

Check if the same lab product or an alternative is used in the 5 most similar protocols
Retinal sections (7 μm thick) fixed in 4% paraformaldehyde (32 (link)) or RPE-choroid flat mounts (12 (link)) were prepared and incubated with 0.1% Triton X-100 in PBS and 10% normal goat serum (Dako, Carpinteria, CA), as previously described. Then the samples were incubated with primary antibodies followed by Alexa Fluor secondary antibodies (Invitrogen). The primary antibodies were: anti-Angptl2 (ab35574; Abcam), anti-Rpe65 (MAB5428; Merck Millipore), anti-F4/80 (Cl:A3-1; AbD Serotec, Raleigh, NC), anti-MCP-1 (ab8101; Abcam), and anti-Ly5.1 and anti-Ly5.2 (110718, 109816; Biolegend, San Diego, CA). The sections were examined under a microscope equipped with a digital camera (Olympus Co., Tokyo, Japan) or a BZ-H1M analyzing system (Keyence, Osaka, Japan). The immunofluorescence intensity of F4/80 was calculated by summing the fluorescent areas using ImageJ software (National Institutes of Health, Bethesda, MD).
+ Open protocol
+ Expand
3

Immunohistochemical Staining Panel

Check if the same lab product or an alternative is used in the 5 most similar protocols
Primary antibodies used were: Alpha-smooth muscle actin (ASMA) (monoclonal, mouse anti-human, C6198, Sigma, dilution 1:500), aquaporin-4 (polyclonal, rabbit anti-human, NBP187679, Novus, dilution 1:500), CK18 (polyclonal, rabbit anti-human, 10830, Proteintech, dilution 1:500), collagen IV (polyclonal, rabbit anti-human, 2150-0140, Bio-Rad, dilution 1:500), retinaldehyde binding protein 1 (CRLBP1) (monoclonal, mouse anti-human, MA1-813, Thermo Fisher, dilution 1:300), Iba1 (polyclonal, rabbit anti-human, 019-19741, Wako, dilution 1:1000), RPE65 (monoclonal, mouse anti-human, MAB5428, EMD Millipore, dilution 1:500), Vimentin-Cy3 (monoclonal, mouse anti-human, C9080, Sigma, dilution 1:300), Rhodamine-conjugated Ulex Europaeus Agglutinin (RL-1062, Vector Labs, dilution 1:500). Secondary antibodies used were Donkey anti-Mouse IgG (H+L) Alexa Fluor® 555 (A31570, Invitrogen, dilution 1:300), Donkey anti-Rabbit IgG (H+L) Alexa Fluor® 488 (A21206, Invitrogen, dilution 1:300), Donkey anti-Rabbit IgG (H+L) Alexa Fluor® 647 (A31573, Invitrogen, dilution 1:300).
+ Open protocol
+ Expand
4

Rhesus Macaque Eye Immunohistochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemistry was performed on rhesus macaque eyes as described previously.13 (link) Briefly, eyes were fixed with 4% paraformaldehyde (PFA) on necropsy, and anterior segments, lens, and vitreous were dissected out within 30 minutes of collection. The remaining posterior eye cups were fixed with 4% PFA for 2 hours at room temperature and washed with phosphate buffered saline (PBS) 4 times for 15 minutes. Followed by cryoprotection with 30% sucrose overnight at 4°C, tissues were embedded in optimal cutting temperature compound and cryosectioned at 18-µm thickness. Consecutive sections enabled comparison of native AF with fluorescence immunolabeling using anti-C5b9 antibody (ab55811; Abcam, Cambridge, MA, USA) to label druse contents, and anti-RPE65 antibody (mab5428; Millipore, Burlington, MA, USA) to label RPE cells. For AF detection, the section was mounted with mounting media after washing with PBS 3 times for 5 minutes. For immunohistochemistry, sections were blocked with 10% normal donkey serum for 30 minutes, then incubated in primary antibody for 1 to 2 hours at room temperature, followed by detection with Alexa Fluor-conjugated secondary antibodies (Thermo Fisher Scientific, Waltham, MA, USA). Images were captured using a confocal microscope (FV1000; Olympus America, San Jose, CA, USA).
+ Open protocol
+ Expand
5

Antibody Profiling for Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary antibodies used were rabbit polyclonal anti-phospho-ERK1/2 antibody (1:150; Phospho-p44/42 MAP kinase antibody, 9101S, Cell Signaling Technology, Danvers, MA, USA; [9 (link),10 (link)]), rabbit polyclonal anti-N-cadherin antibody (1/200; ab12221, Abcam, Cambridge, UK; [4 (link)], mouse monoclonal anti-β-catenin antibody (1:1000; C7207, Sigma-Aldrich; Saint Louis, MO, USA, [13 (link)]) and mouse monoclonal anti-RPE65 antibody (1:1000; MAB5428, Millipore; Billerica, MA, USA, [2 (link)]). The secondary antibodies used were biotinylated goat anti-rabbit IgG antibody (1:400; BA-1000, Vector Laboratories, Burlingame, CA, USA), biotinylated goat anti-mouse IgG antibody (1:400; BA-9200, Vector Laboratories, Burlingame, CA, USA), Alexa 488-conjugated goat anti-rabbit IgG antibody (1:500; A-11034, Thermo Fisher Scientific, Waltham, MA, USA) and tetramethylrhodamine-conjugated goat anti-mouse IgG antibody (1:200; T2762, Life Technologies, Rockville, MD, USA).
+ Open protocol
+ Expand
6

Immunohistochemical Analysis of Enucleated Eyes

Check if the same lab product or an alternative is used in the 5 most similar protocols
Eyes were enucleated and placed in 4% paraformaldehyde (PFA) for less than 30 min, followed by gentle removal of anterior segments, including lens and vitreous. Whole eye cups were fixed in 4% PFA for 2 h at room temperature, rinsed with phosphate-buffered saline (PBS), cryoprotected with 30% sucrose overnight, embedded in optimal cutting temperature (OCT) medium, and then cryosectioned (18 μm) using a cryostat (CM3050 S, Leica). For immunohistochemistry, sections were washed with PBS, blocked with 10% normal donkey serum for 30 min, then incubated in primary antibody for 1–2 h at room temperature, followed by Alexa Fluor 568-conjugated secondary antibodies (Invitrogen). Primary antibodies include RPE65 (MAB5428, 1:250, Millipore), EGFP (Novousbio, NB100-1770, 1:500), IBA-1 (Wako, AB10558, 1:100), GFAP (Dako, Z0334, 1:200), CD45 (BD, 552566, 2.5 μg/mL), and CD3 (Abcam, ab11089, 1:100).
+ Open protocol
+ Expand
7

Antibodies Used for Immunodetection in Newt Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The primary and secondary antibodies used for immunoblotting and immunohistochemistry were as follows: for Pax6, mouse monoclonal anti-Pax6 antibody (1:100; AD2.38, sc-32766; Santa Cruz Biotechnology, TX 75220, U.S.A) and biotinylated goat anti-mouse IgG antibody (1:500; Vector Laboratories, CA 94010, U.S.A); for Sox2, rabbit anti-Sox2 antibody (1:660; ab97959; Abcam, Cambridge, U.K.) and biotinylated goat anti-rabbit IgG antibody (1:500; Vector Laboratories); for RPE65, mouse monoclonal anti-RPE65 antibody (1:500; MAB5428; Millipore, Darmstadt, Germany) and tetramethylrhodamine-conjugated goat anti-mouse IgG antibody (1:200; T2762; Life Technologies, MD 20850, U.S.A); and for PCNA, human autoantibody to PCNA (1:500; gift from Dr. T. Saito)5 (link) and Alexa Fluor 488-conjugated goat anti-human IgG (1:1,000; A-11013; Life Technologies). For the negative control, mouse or rabbit antibodies (IgG) with no specific reactivity to newt tissues (e.g., anti-dsRed antibody; 632543 or 632496; Clontech, CA 94043, U.S.A) were applied, instead of the primary antibody, at the same concentration of IgG.
+ Open protocol
+ Expand
8

RPE Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
RPE were incubated in serum free medium for 48 hours before harvest. Media were collected for zymography/reverse zymography studies, and cells detached with 5mM EDTA were lysed in RIPA buffer with cOmplete, Mini Protease Inhibitor Cocktail (Roche, Indianapolis, IN, USA). The culture plate was washed 6–7 times with 1xDPBS and once with ice cold sterile water to remove any remaining cells. ECM was scraped directly into Laemmli buffer (Bio-Rad). Bradford assay was used to determine protein concentrations. ECM and RPE cell lysate (15–20 μg protein) were run separately on precast Mini-Protean TGX gels (Bio-Rad) and transferred onto PVDF membrane (Immobilon). Blots were blocked with 5% BSA in PBS and incubated in ApoE (1:1000, AB947, Millipore), BEST1 (1:500, SAB2701026, Sigma-Aldrich), and RPE65 (1:5000, MAB5428, Millipore) overnight at 4°C. β-Actin (1:10,000, GTX629630, GeneTex) was used as a housekeeping gene. IRDye secondary antibodies were used and blots imaged with the Odyssey Clx (Li-Cor, Lincoln, NE, USA). For TIMP3 (1:1200, MAB3318, Chemicon), nitrocellulose membranes were used, while milk was used as blocking buffer and antibody diluent.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!