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5 protocols using anti gfp

1

Co-immunoprecipitation Assay for TaMOR-GFP and ARF5-Flag

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The coding sequence of TaMOR was cloned into vector pCAMBIA1300‐GFP to form TaMOR‐GFP. The coding sequence of ARF5 was cloned into vector to pCAMBIA1300‐Flag to form ARF5‐Flag. They were introduced into Agrobacterium tumefaciens strain EHA105 and infiltrated into N. benthamiana leaves. After 48 h, the infiltrated leaves were ground to powder in liquid nitrogen and resuspended in 500 μl protein extraction buffer. The Co‐IP assay was performed as previously described (Cai et al., 2021 (link)). Anti‐GFP mAb magnetic beads (Medical Biological Laboratories, D153‐11), Anti‐GFP (Medical Biological Laboratories, 598‐7) and anti‐Flag (Medical Biological Laboratories, M185‐7) antibodies were used in the assay.
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2

Immunofluorescence Staining of GFP, Myc, and Phospho-PAK1

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The following antibodies were used: anti-GFP (Medical & Biological Laboratories, Nagoya, Japan, Cat# 598, RRID: AB_591819 or Nacalai Tesque, Kyoto, Japan, Cat# 04404-84, RRID: AB_10013361), anti-Myc (Medical & Biological Laboratories, Nagoya, Japan, Cat# M047-3, RRID: AB_591112), and anti-phospho-PAK1 (Thr423) (Cell Signaling Technology Cat#2601, RRID: AB_330220). Alexa Fluor 488 (Invitrogen, Carlsbad, CA, USA) was used as a secondary antibody. 4′, 6-diamidino-2-phenylindole (DAPI; Nichirei Bioscience, Tokyo, Japan) was used for staining DNA.
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Multicolor Immunofluorescence Staining

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The following antibodies were used: anti-GFP (Medical and Biological Laboratories Cat #598, RRID: AB_591819 or Nacalai Tesque, Cat #04404-84, RRID: AB_10013361), anti-NeuN (Millipore, Cat #MAB377, RRID:AB_2298772) and anti-Myc (Medical and Biological Laboratories, Cat #M047-3, RRID: AB_591112). Alexa Fluor 488 and 568 (Invitrogen) were used as secondary antibodies. 4′,6-diamidino-2-phenylindole (DAPI; Nichirei Bioscience) was used for staining DNA. Rhodamine-phalloidin (Invitrogen) was used for staining filamentous actin.
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Immunohistochemical Analysis of Apoptosis and Inflammation in Animal Tissues

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Animals were anesthetized by intraperitoneal administration of sodium pentobarbital (50 mg/kg) and intracardially perfused with 30 ml of PBS followed by a fixative containing 4% paraformaldehyde in 0.1 M PB. After perfusion fixation, animal tissues were kept in the same fixative at 4°C for 18 h and permeated with 15% (w/v) sucrose buffer with agitation. Each tissue was embedded in Tissue-Tek O.C.T compound (Sakura, Tokyo, Japan), frozen with liquid nitrogen and cut on a cryostat at 8 μm sections collected on MAS (Matsunami aggressive silane)-coated glass slides. Sections were blocked with 3% normal goat serum in PBS at room temperature for 15 min and processed for immunohistochemistry. The following antibodies were used: anti-TNF-α (1∶100, Abcam, Cambridge, United Kingdom), anti-GFP (1∶100, Medical & Biological Laboratories, Nagoya, Japan), anti-cleaved caspase3 (1∶100, Cell Signaling Technology Japan, Tokyo, Japan), and AlexaFluor 488, 594 and 633 (1∶1000, Abcam) as primary and secondary antibodies. For marker stains, we used 4′,6-diamidino-2-phenylindole (DAPI) for nuclei and fluorescent Nissl (NeuroTrace 435/455 or 530/615, Molecular Probes, Eugene, Oregon, USA) for neurons. Fluorescence images were captured and analyzed using Nikon C1si and the software, EZ-C1 version 3.90 (Nikon, Tokyo Japan).
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5

Quantification of Autophagy Levels in Yeast

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The YOM38 yeast cell containing the pR316-GFP-Atg8 plasmid yeast strain in glucose liquid medium with initial OD600 value of 0.1 was treated with 0, 0.3, 1, and 3 µM GENI or 300 µM RES for 22 h. The yeast cells of different groups were collected and sonicated for 5 min. Cell lysates were centrifuged at 12,000× g for 15 min to obtain the supernatants for Western blot. Protein concentrations were measured using a BCA protein assay kit (CoWin Biotech, Beijing, China). Western blot was performed as described in our previous study [20 (link)]. Approximately 20 µg protein was separated using sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto poly (vinylidene fluoride) membranes. Membranes were incubated with primary antibodies followed by secondary antibodies. The primary antibodies used were as follows: anti-GFP (Medical & Biological Laboratories, Nagoya, Japan) and anti-β-actin (CoWin Biotech, Beijing, China). The secondary antibodies used were horseradish peroxidase-linked antirabbit IgGs (CoWin Biotech, Beijing, China). Antigens were visualized using an eECL Western Blot Kit (CoWin Biotech, Beijing, China) and digitized using the ImageJ software (National Institute of Health, Rockville, MD, USA).
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