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Epoch 2ns microplate spectrophotometer

Manufactured by Agilent Technologies
Sourced in United States

The EPOCH 2NS microplate spectrophotometer is a compact and versatile instrument designed for absorbance-based measurements in microplates. It offers high-speed scanning capabilities and supports a wide range of microplate formats.

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5 protocols using epoch 2ns microplate spectrophotometer

1

Folin-Ciocalteu Assay for Total Phenolics

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Total phenolic content determination by Folin–Ciocalteu assay, was performed according to Swain and Hillis [49 (link)] with a few modifications. Briefly, 10 µL of the SCG extracts were mixed with 230 µL of distilled water and 10 µL of Folin–Ciocalteu reagent in a 96-well microplate. The mixture was incubated at 25 °C for 3 min. Lastly, 25 µL of 4 N Na2CO3 was added. The mixture was incubated for 2 h in the dark at 25 °C. After incubation, the absorbance at 750 nm was registered using an EPOCH 2NS microplate spectrophotometer (BioTek Instruments, Inc., Winooski, VT, USA). The calculations were completed using a gallic acid standard curve (from 0 to 0.4 mg/mL) and the results were expressed as milligrams of gallic acid equivalents per 100 g of dry sample (mg GAE/100 g). Measurements were made in triplicate (n = 3).
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2

DPPH Radical Scavenging Assay

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DPPH radical scavenging activity assay was performed according to Brand-Williams et al. [51 (link)], with slight modifications. Briefly, 20 µL of the SCG extracts were mixed with 280 μL of the DPPH reagent (100 µM in ethanol). After 30 min of incubation, the absorbance was recorded at 540 nm in an EPOCH 2NS microplate spectrophotometer (Biotek Instruments, Inc., Winooski, VT, USA). The results were calculated from a Trolox standard curve (from 0 to 400 µM) and were expressed as micromoles of Trolox equivalent per 100 g of dry sample (µmol TE/100 g). Measurements were made in triplicate (n = 3).
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3

Growth Dynamics of Haloferax volcanii under Salt Stress

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Haloferax volcanii strains were grown in Hv-YPC medium (Dyall-Smith, 2008 ) at 45°C with an optimal concentration of 18% salt water (2.46 M NaCl, 88 mM MgCl2, 85 mM MgSO4, 56 mM KCl, 12 mM Tris-HCl, pH 7.5). For low and high salt stress, salt concentration was adjusted to 15% and 23%, respectively, without modifying the ion ratios. While standard conditions (18% salt water) correspond to 15% NaCl, low salt (15% salt water) corresponds to 10.8% NaCl and high salt (23% salt water) corresponds to 19.2% NaCl. Growth of cultures was monitored in 96 well microtiter plates using an Epoch2 NS Microplate Spectrophotometer (BioTek Instruments, Bad Friedrichshall, Germany). Strains were precultured in Hv-YPC medium to OD650nm of 0.4–0.7, after dilution to an OD650nm of 0.05 they were transferred to microtiter plates. Cultures were incubated aerobically with orbital shaking at 45°C and OD650nm was measured every 30 min. Outer wells were filled with salt water as evaporation barriers (Liao et al., 2016 (link)). The growth curves represent the average of at least three biological replicates.
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4

Malondialdehyde Quantification Assay

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This assay was performed according to Lizárraga-Velázquez et al. [58 (link)] and Solé et al. [59 (link)] with slight modifications. Briefly, 50 μL of the supernatant were mixed with 163 μL of 1 methyl-2-phenylindole (10.3 mM, in methanol:acetonitrile, 1:3; v/v), 50 μL of distilled water and 75 μL of HCl at 37%. This reaction mix was incubated at 45 °C for 40 min. Next, the reaction solution was cooled on ice for 10 min and centrifuged at 3000× g for 15 min at 4 °C. The absorbance was recorded at 586 nm using an EPOCH 2NS microplate spectrophotometer (Biotek Instruments, Inc., Winooski, VT, USA). The calculations were performed by using a 1,1,3,3-tetramethoxypropane (Sigma Aldrich 108383-100ML) standard curve (from 0 to 12 µM) and the results were expressed as micromoles of malondialdehyde per gram of cellular pellet (μmol MDA/g pellet). Measurements were made in triplicate (n = 3).
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5

Growth Kinetics of Halobacterial Strains

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Growth experiments were carried out in microtiter plates using a heated plate reader (Epoch 2 NS Microplate Spectrophotometer, BioTek Instruments). Strains H66 (wild type) and Δs479 were precultured in Hv-Ca medium supplemented with uracil to OD650 nm = 0.4–0.7 and then diluted to OD650 nm = 0.05 and transferred to microtiter plates in triplicates. These were then cultured (aerobically, orbital shaking, 45°C) while OD650 nm was measured every 30 min. Outer wells were filled with salt water as evaporation barriers (Jaschinski et al., 2014 (link)). For stress conditions, adjusted media preparations were used (see section Strains and Growth Conditions). Doubling time [d (h)] and growth rate [μ (h–1)] were calculated as growth rate μ = (ln(xt) − ln (x0)) / (tt0) and doubling time d = ln(2) / μ. Calculations were carried out separately for all replicates before calculating mean value and standard deviation. Phases of exponential growth were identified using fitted trendlines and corresponding R2 values (Supplementary Figures 5B,C).
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