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6 protocols using anti actin

1

Amyloid-beta Peptide Preparation

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The following primary antibodies were used: anti-Notch1 intracellular domain (NICD) (Cell Signaling Technology, MA, USA), anti-Notch1 extracellular domain (NEXT) (Thermo Fisher Scientific, MA, USA), anti-Hey-1 (GeneTex, CA, USA), anti-Actin (TransGen, Beijing, China). Synthetic amyloid-beta peptides 1–40 (Aβ1–40) were purchased from Invitrogen (Invitrogen, CA, USA) and dissolved in hexafluoreisopropanol (HFIP) (Sigma, MO, USA) for 2 h at room temperature, and lyophilized peptide was dissolved in dimethylsulfoxide (DMSO).
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2

Western Blot Analysis of Cellular Proteins

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The harvested cells were lysed with lysis buffer containing protease inhibitor cocktail (Roche, Amherst, CA, USA). Protein samples were separated by SDS–PAGE and transferred to nitrocellulose membranes. The blocking buffer was prepared with 5% nonfat dry milk in TBST buffer, and the membranes were blocked at room temperature for 1 hour and then incubated with primary antibodies in a shaker at 4°C overnight. Antibodies were anti-GSTO2 (Proteintech, 14562-1-AP), anti-HUS1 (Proteintech, 11223-1-AP), anti-INTS1 (Sigma–Aldrich, HPA021658), anti-TMEM184A (Proteintech, 25989-1-AP), anti-TMEM190 (Invitrogen, PA5-70986), and anti-Actin (TransGen Biotech, HC201-01). The membranes were incubated with the corresponding secondary antibodies (1 : 2000) for 1 hour at room temperature the next day, and finally, the proteins were visualized with chemiluminescence solution.
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3

In vitro Secretory Activity of VdSCP23

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To detect the secretory activity of VdSCP23 in vitro, a fused fragment including the TrpC-promoter region, the coding sequence of VdSCP23-GFP and the Nos-terminator was introduced into the vector pCOM [68 (link)]. The primer pairs for its amplification are listed in Table S3. The conidia of complemented strain ECVdSCP23-GFP were collected from a shake culture maintained in complete medium (CM: 0.6% yeast extract, 0.6% casein acids hydrolysate, 1% sucrose) for 3 days. The conidia were transferred to YEPD liquid medium (1% yeast extract, 2% peptone, 2% glucose) containing cotton root and shaken at 25 °C for 24 h. Acetone at a final concentration of 20% (w/v) was used to extract total protein from the culture supernatant after storage at −80 °C overnight. The solution was centrifuged at 13,000× g for 10 min at 4 °C. The total protein was lysed by adding plant RIPA lysis buffer containing phenylmethanesulfonyl fluoride to the dried precipitate. The target proteins were detected with Western blotting using anti-GFP antibodies (TransGen Biotech, Beijing, China), and anti-actin (TransGen Biotech, Beijing, China), anti-mouse (TransGen Biotech, Beijing, China) and anti-rabbit (TransGen Biotech, Beijing, China) antibodies were used as secondary detection antibodies.
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4

SARS-CoV-2 Protein Interaction Study

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Flag-TRIM22 was obtained from SunV Biotechnology (Shenzhen, China), and the mutant plasmid for TRIM22 was obtained by site-directed mutagenesis on the original. Strep-NSP8 was kindly provided by Prof. Nevan J. Krogan (University of California, San Francisco), and the mutant plasmid for NSP8 was obtained by site-directed mutagenesis on the plasmid. His-Ub and His-UB-mutant plasmids were kindly provided by Prof. Junying Yuan (Center for Interdisciplinary Research in Biology and Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences). si-TRIM7 and si-TRIM22 were purchased from Guangzhou Ribo Biotechnology Co.
Anti-His (TransGen Biotech, F1804), anti-TRIM22 (Proteintech, 13744-1AP), anti-TRIM7 (Proteintech, 26285-1-AP), anti-Strep tag II (Abcam, ab76949), anti-GFP (TransGen Biotech, HC101), anti-NSP8 (abclonal, A20202), anti-nucleocapsid protein (Sino Biological, 11675-T62), anti-Spike (Sino Biological, 40591-R235), anti-mouse IgG (TransGen Biotech HS201-01), anti-rabbit IgG (TransGen Biotech, HS101-01), and anti-actin (TransGen Biotech, HC201) were purchased from the companies indicated in parentheses.
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5

Immunoblotting for SARS-CoV-2 Proteins

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Cell lysates were boiled in 2× Laemmli sample buffer containing 10% βME (Sigma, M3148). Cell lysates were analyzed by SDS-PAGE and then transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, IPFL10100). After blocking with 5% BSA in TBS buffer containing 0.05% Tween 20, the blot was sequentially probed with primary antibodies and the horseradish peroxidase (HRP)-conjugated secondary antibody. Protein bands were detected by SuperSignal West Pico Chemiluminescent substrate (Bio-Rad). The following antibodies were used: anti-ACE2 (Abcam, ab108209), anti-SARS-CoV-2 nucleoprotein (Sino Biological, 40588-T62), anti-p-hRIPK1 (Cell Signaling Technology, 65746), anti-RIPK1 (Cell Signaling Technology, 3493), anti-EGFR (Cell Signaling Technology, 4267), anti-NSP12(Cell Signaling Technology), anti-Flag (Sigma, F1804), anti-Myc (Sigma, C3956), anti-Strep tag II (Abcam, ab76949), anti-Actin (TransGen Biotech, HC201) and anti-Tubulin (TransGen Biotech, HC101).
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6

Immunoprecipitation and Western Blot Analysis

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In immunoprecipitation, HEK-293T cells were harvested with 1% NP-40 lysis buffer (50 mM Tris, pH 7.4, 150 mM NaCl, 1% NP-40, 5 mM glycerophosphate, 5 mM NaF) at 4 °C for 30–60 min. The lysates were centrifuged at 12,000 rpm for 10 min at 4 °C, keeping the supernatant and incubating with the indicated antibodies and Protein G Agarose (Thermo, 20397). After the incubation, beads were washed three times with lysis buffer, and then eluted with 2× Laemmli sample buffer.
Boiled cell lysates were separated by SDS–PAGE gels. Then transferred it onto polyvinylidene difluoride (NC) membranes (Millipore, IPFL10100). Blocking with 5% BSA in TBST buffer, then the blot was orderly probed with primary antibodies and the horseradish peroxidase (HRP)-conjugated secondary antibody. Protein bands were detected using SuperSignal™ West Pico PLUS Chemiluminescent Substrate (Thermo Scientific, 34580). The following antibodies were used: anti-His (TransGen Biotech, F1804), anti-FLAG (TransGen Biotech, F1804), anti-Strep tag II (Abbkine, 8C12), anti-GFP (TransGen Biotech, HC101), anti-Mouse IgG (TransGen Biotech, HS201-01), anti-Rabbit IgG (TransGen Biotech, HS101-01) and anti-Actin (TransGen Biotech, HC201).
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