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4 protocols using β tubulin

1

Detecting DNA Damage Foci via Immunostaining

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DNA damage foci were detected using antibodies against 53BP1 (Novus Biologicals; NB100-304) and anti-phospho-Histone H2A-X (Ser139) (Millipore; 05-636), lamin B1 (YenZym), lamin A/C (Millipore; MAB3211), progerin (Santa Cruz, SC 81611), LAP2 (Santa Cruz, H-130), LAP2α (Abcam, Ab 5162), TRF1 (Abcam 10579), V5-tag (Invitrogen; 37-7500), myc (Santa Cruz, sc-40), GAPDH (Sigma; G9545), β-tubulin (Covance; MRB 435P), β-actin (Sigma; A5441).
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2

Western Blot Analysis of Amyloid-Beta

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2% SDS brain lysates were heated at 70°C for 5 min in the presence of denaturing sample buffer, separated on a 10% Bis-Tris gel (Bio-Rad) in 1× 2-(N-morpholino)ethanesulfonic acid (MES) running buffer (Bio-Rad), and transferred onto 0.2 µm PVDF (EMD Millipore). Membranes were blocked in casein blocking buffer and incubated overnight with primary antibodies, Ab5 (human Aβ1-16; T.E. Golde) and β-tubulin (Covance), and detected with Alexa Fluor anti–mouse 680 and Alexa Fluor anti–rabbit 800 (Life Technologies). Images were developed using an Odyssey infrared scanner (Li-Cor Biosciences) and analyzed using the densitometric feature for semiquantitative analysis using the Odyssey Infrared Imaging System software v.3.0.21 (Li-Cor Biosciences). Bands were manually selected, and background readings of the BRI2-Stop were subtracted.
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3

Immunoblot Analysis of Liver Signaling

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Liver extracts were prepared using Triton lysis buffer (20 mM Tris-pH 7.4, 1% Triton-X100, 10% glycerol, 137 mM NaCl, 2 mM EDTA, 25 mM β-glycerophosphate, 1 μM sodium orthovanadate, 1 μM PMSF and 10 μg/mL leupeptin plus aprotinin). Extracts (30–50 μg of protein) were examined by immunoblot analysis by probing with antibodies to pSer63-cJUN, pJNK, pMKK4, MKK4, pMKK7, and MKK7 (Cell Signaling Technologies), JNK1/2 (BD Pharmingen), cJUN and GAPDH (Santa Cruz) and β-Tubulin (Covance). Immunocomplexes were detected by fluorescence using anti-mouse and anti-rabbit secondary IRDye antibodies (Li-Cor) and quantitated using the Li-Cor Imaging system.
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4

Engineered NK1 Variant Binding Assay

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The term “eNK1 monomer” refers to the engineered NK1 variant M2.2 D127N, and “eNK1 dimer” refers to the disulfide-linked dimer cd D127N from our previous work [29 (link)]. HGF was from R&D Systems. FGFb was from GIBCO. BaF3-MET cells were provided by Patrick Ma, Case Western Reserve University. BaF3-MET growth media was RPMI 1640 medium with Glutamax (Invitrogen) with 10% fetal bovine serum (FBS) (American Type Culture Collection), 1% penicillin-streptomycin, 0.5 ng/mL mouse interleukin-3 (R&D Systems), and 1 mg/mL Geneticin (GIBCO). Human umbilical vein endothelial cells (HUVECs) and the EGM-2 BulletKit were purchased from Lonza Walkersville Inc. A549 cells were grown in Dulbecco’s Modified Eagle Media (Invitrogen) with 10% FBS and 1% penicillin-streptomycin. The PE-conjugated anti-FLAG antibody for binding assays was from Prozyme. Primary antibodies for Western blot analysis were all from Cell Signaling except for β-tubulin (Covance) and c-MET (Santa Cruz Biotechnology). All secondary antibodies were purchased from Jackson ImmunoResearch, and chemoluminescent substrate was from ThermoScientific. NP-40 buffer was composed of 20 mM Tris pH 8.0, 137 mM NaCl, 10% glycerol, and 1% IGEPAL/NP40. All cells and reagents for the PathHunter Assay were from DiscoveRx Corporation.
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