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5 protocols using a1r inverted laser scanning confocal microscope

1

Immunofluorescence Analysis of Keratinocytes

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Keratinocytes with or without 2mM CaCl2 (denoted as Ca2+) or MgCl2(denoted as Mg2+) as indicated were fixed after no treatment or treated with DMSO, BTT3033 (20μM), ML141 (10μM). The cells were fixed with 4% paraformaldehyde (PFA) for 10 min and permeabilized with 0.1% Triton X-100. Cells were incubated with primary antibodies for 2 h and with appropriate secondary antibodies conjugated to Alexa Fluor 568 or 488 (1:1000) and phalloidin conjugated to Alexa Fluor 647 (1:500), including Hoechst, for 1 h. Cells were mounted on slides using FluorSave (ICN). Normal human skin sections were processed for staining as previously described [61 (link)]. Confocal microscopy was performed using a Nikon A1R inverted confocal laser scanning microscope with a 60x oil objective and laser excitation wavelengths of 405, 488, 561 and 633 nm. Some samples were imaged using a structured illumination microscopy (N-SIM, Nikon) using an iXon3 EM-CCD camera (Andor), respectively. Images within the same experiments were all acquired at the same laser settings using Nikon NIS Elements software.
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2

Immunofluorescence Staining and Confocal Imaging

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Cultured cells were washed twice with PBS, fixed with 4% PFA in PBS for 10 min or ice-cold methanol for 2 min and permeabilised with 0.1% TritonX-100 for 10 min. Cells were incubated with primary antibodies for 2 hours and appropriate secondary antibodies conjugated to Alexafluor-568 or 488 and Phalloidin conjugated to Alexafluor 647, including Hoescht, for 1 hour. Cells stained using HaloTag TMR Direct Ligand were incubated live with the ligand overnight before fixation. Cells were mounted onto slides using Fluorsave (ICN). Confocal microscopy was performed using a Nikon A1R inverted confocal laser scanning microscope with a 60x oil objective and laser excitation wavelengths of 405nm, 488 nm, 561 nm and 633 nm.
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3

Imaging Actin Dynamics in MEFs

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MEFs were seeded at low confluency in imaging chambers (ibidi, 80826) and transfected with mRFP-Lifeact and EGFP-FSCN-1 at 24 h post seeding. Bbs6 wild-type and knockout MEFs were imaged at 48 h after transfection with a Leica SP8 confocal microscope with photomultipliers and a HyD detector (HC PL APO 63×/1.40 OIL, Leica) under the conditions of 37°C supplied with 5% CO2. Videos of Bbs8 wild-type and knockout MEFs in an environmental chamber maintained at 37°C/5% CO2 were acquired on a Nikon A1R inverted laser scanning confocal microscope (Nikon Instruments) combined with a 60× Plan Fluore oil immersion objective (NA 1). Excitation wavelengths of 488 nm and 561 nm (diode lasers) were used. To follow their movement, cells co-expressing mRFP-Lifeact and EGFP-FSCN-1 were imaged every 5 sec for 30 timepoints. Videos were acquired either with the Leica LAS X (version 3.5.7.23225) or Nikon NIS-Elements (v4) imaging software.
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4

Cytoskeletal and Stemness Marker Analysis

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To determine the changes in cytoskeleton structure and expression of different markers, CiSCs, BM-MSCs, and MCF7 cells were seeded on glass slides precoated with poly-d-lysine (Sigma-Aldrich, USA). Cells were fixed in 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and blocked with 4% BSA. Cells were then stained with Alexa Fluor® 488 Phalloidin (Molecular Probes, USA), α-tubulin antibody (Cell Signaling Technology, USA), Ki-67 antibody (Cell Signaling Technology, USA), Oct-4 antibody (Cell Signaling Technology, USA), Sox2 antibody (R&D Systems, USA), Nanog antibody (Bioss Antibodies, USA), E-Cadherin antibody (Cell Signaling Technology, USA), N-Cadherin antibody (Abcam, USA), Snail + Slug antibody (Abcam, USA), ALDH1A1 antibody (Pierce Antibodies, USA), and β-Catenin antibody (Cell Signaling Technology, USA). Cells were labeled with the appropriate Alexa Fluor® secondary antibodies (Molecular Probes, USA) and counterstained with Hoechst 33342 (Molecular Probes, USA) to visualize the cell nucleus. Cells were imaged either under a 60× or 100× objective with a Nikon A1R inverted laser scanning confocal microscope (Nikon microsystems, France).
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5

Epithelial-Mesenchymal Transition Protein Analysis

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Cells were seeded on coverslips, fixed with 4% paraformaldehyde, permeabilized with 0.1% Triton X-100, and blocked with 4% BSA. Cells were then stained with hTERT antibody (Abcam), E-Cadherin antibody (Cell Signaling Technology), N-Cadherin antibody (Abcam), Snail+Slug antibody (Abcam), ALDH1A1 antibody (Pierce Antibodies) and β-Catenin antibody (Cell Signaling Technology). The primary antibodies were detected by using an appropriate Alexa Fluor® secondary antibodies (Molecular Probes) and counterstained with Hoechst 33342 (Molecular Probes) to visualize the cell nuclei. Cells were imaged under a 60X objective with Nikon A1R inverted laser scanning confocal microscope (Nikon Microsystems, Massy, France).
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