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13 protocols using enhanced chemi luminescence (ecl)

1

Protein Extraction and Western Blotting

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At the scheduled time points after incubation, cellular proteins in samples were extracted by lysing with radioimmunoprecipitation assay (RIPA; Beyotime) buffer. Proteins (20 μg) were resolved by SDS–PAGE (Beyotime) and transferred to nitrocellulose membranes (Beyotime). After closure with 5% skim milk or 5% BSA for at least 1 h, membranes were incubated separately with primary antibodies against β-Actin (1:1000), NFATc1 (1:1000), MMP9 (1:1000), CTSK (1:1000), IκB-α (1:1000), phospho-P38 (1:1000), P38 (1:2500), phospho-JNK (1:5000), JNK (1:2000), phospho-ERK (1:1000), ERK (1:1000) and TRAF6 (1:5000) at 4 °C overnight. The corresponding secondary antibody dilutions (1:1000) were then added for 1 h at room temperature after washing membranes adequately with Tris-buffered saline Tween (TBST) for an appropriate time and frequency. Finally, to show the protein bands, membranes were treated with enhanced chemiluminescence (ECL; Yeasen) reagents and imaged using Image Lab 3.0. Protein quantification (relative grey level of the bands) was measured using ImageJ software.
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2

Western Blot Protein Detection

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Total protein was extracted from the cells with radioimmunoprecipitation assay (RIPA) buffer (Beyotime Biotechnology Shanghai, China) supplemented with protease inhibitors (Beyotime) and phosphatase inhibitors (Beyotime). The membranes were then blocked with 5% skim milk for 90 min at room temperature and incubated with the primary antibodies overnight at 4 °C. The blots were then washed 3 times for 10 min with TBST (TBS with 0.1% Tween 20) and incubated with HRP-conjugated goat anti-rabbit or mouse IgG secondary antibodies (1:5000) for 1 h at room temperature. The bands were visualized by incubating the blots with enhanced chemiluminescence (ECL, Yeasen) solution and were imaged by a Bio-Rad Imaging system detector.
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3

Subcellular Fractionation Immunoblotting Protocol

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Western blots were performed on isolated subcellular fractionations resolved in lysing buffer containing: 50 mm Tris-HCl, pH 7.5, 150 mm NaCl, 2 mm EDTA, 2 mm EGTA, and 1% SDS supplemented with a protease inhibitor mixture (NCM Biotech, Suzhou, China). Protein samples were separated by sodium dodecyl-sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and blotted to PVDF membranes (Millipore, Sigma-Aldrich, Ireland). After blocking in 5% non-fat milk, the following primary antibodies were used: anti-Calnexin rabbit pAb (1:1000, Cat.A15631, ABclonal, Wuhan, China), anti-Calreticulin rabbit pAb (1:1000, Cat.A18013, ABclonal), anti-GRP75 mouse mAb (1:1000, Cat. sc-133137, Santa Cruz, CA, USA), anti-IP3R rabbit pAb (1:1000, Cat. ab5804, Abcam, MA, USA), anti-VDAC1 mouse mAb (1:1000, Cat. Ab186321, Abcam), anti-TOMM20 rabbit mAb (1:1000, Cat. Ab187735, Abcam,), anti-SAMM50 rabbit pAb (1:1000, Cat. ab246987, Abcam), anti-MIC60 (1:1000, Cat. 10179-1-AP, Proteintech, Chicago, USA), anti-MTX1 rabbit pAb (1:1000, ab233205, Abcam), anti-GAPDH Rabbit mAb (1:5000, Cat. A19056, ABclonal). After incubation of the blots with horseradish peroxidase (HRP)-conjugated secondary antibodies for 1 h, signals were detected using the ECL (YEASON, Shanghai, China). Quantification was performed with Image Lab software for the ChemiDoc XRS system (Bio-Rad, Hercules, CA).
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4

Western Blot Protein Expression Analysis

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The pull-down samples and 1% of the input or cell lysis were loaded on a 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) gel (Bain et al., 2017 ). After the contents of the SDS-PAGE gels were transferred polyvinylidene fluoride (PVDF) membranes using standard procedures, the membranes were blocked in TBST (Tris-Buffered Saline and Tween 20) containing 5% non-fat milk powder for 1 h at room temperature. The membranes were then incubated with anti-GST (Santa Cruz), anti-His(Cell Signal Technology) or anti-Flag (Sigma) antibody overnight at 4 °C and washed three times with TBST. The membranes were subsequently incubated with horseradish peroxidase (HRP)-conjugated secondary antibody (Proteintech) for 1 h at room temperature, and bands were detected with enhanced chemiluminescence (ECL; Yeasen). The resulting images were screened by using a chemiluminescence imaging system (ProteinSimple).
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5

Western Blot Protein Quantification

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IB was carried out as previously described [31 (link), 36 (link)–39 (link)]. Cellular proteins were quantified, resolved on SDS-PAGE and electroblotted onto a polyvinylidene difluoride membrane. Following blocking, the membrane was incubated with an appropriate primary antibody and then incubated with a corresponding anti-mouse IgG or anti-rabbit IgG conjugated to horse radish peroxidase. The blots were developed by ECL (Yeasen) or ECL Plus (Yeasen) method.
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6

Quantitative Western Blot Analysis of Rheumatoid Arthritis

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Proteins that separated from RA‐FLSs with RIPA lysis buffer (Shanghai Absin Biotechnology Co., Ltd.) were quantified with the application of a bicinchoninic acid (BCA) protein assay kit (Shanghai Yisheng Biotechnology Co., Ltd.). Then, the proteins were exposed to 8% SDS‐PAGE, after which were transferred to PVDF membranes. The membranes that sealed by 5% nonfat milk or 5% bovine serum albumin (BSA) were subjected to primary antibodies against SPTBN1 (ab124888; 1:1,000; Abcam), MMP2 (ab92536; 1:1,000; Abcam), MMP9 (ab76003; 1:1,000; Abcam), Bcl2 (ab32124; 1:1,000; Abcam), Bax (ab32503; 1:1,000; Abcam), cleaved caspase3 (ab32042; 1:500; Abcam), PIK3R2 (ab180967; 1:2,000; Abcam), p‐PI3K (ab278545; 1:1,000; Abcam), p‐AKT (ab38449; 1:1,000; Abcam), PI3K (ab140307; 1:1,000; Abcam), AKT (ab8805; 1:1,000; Abcam), or GAPDH (ab9485; 1:2500; Abcam) at 4°C overnight, after which was the probe with HRP‐labeled goat anti‐rabbit secondary antibody (ab6759; 1:5000; Abcam) at room temperature for 2 h. At last, ECL (Yeasen Biotech) and ImageJ (Version 146) were applied for the visualization and analysis of protein blots.
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7

Western Blot Analysis of OSCC Proteins

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OSCC cell lines and tissues protein samples were lysed in RIPA lysis buffer (SIGMA, Cat# R0278). Furthermore, proteins were separated by SDS PAGE gels, transferred to PVDF membranes (Pall, Cat# BSP0161) and then sealed with 5 % skim milk. The primary antibodies were incubated at 4 °C for overnight. Subsequently, goat anti-mouse (Proteintech, Cat# SA00001-1,1:10000) and goat anti-rabbit (Proteintech, Cat# SA00001,1:10000) secondary antibodies for 1 h at room temperature, and finally proteins were quantified by ECL (YEASEN, Cat# 36208ES76) Prime Western Blotting Detection reagent. The information of primary antibodies was as follows. HNRNPC (Abclonal, Cat# A0057,1:1000); E-cadherin (Proteintech, Cat# 20648-1-AP,1:5000); N-cadherin (Proteintech, Cat# 13769-1-AP,1:5000); MMP9 (Proteintech, Cat# 10375-2-AP,1:5000); GAPDH (Proteintech, Cat# 66031-1-1g,1:5000); α-tublin (Proteintech, Cat# 66031-1-1g,1:5000).
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8

Protein Expression Analysis of EMT Markers

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Cells and tissue protein were extracted by RIPA lysis. SDS PAGE gels were used to separate protein samples, and then proteins were transferred on PVDF membranes (Pall, Cat# BSP0161). Subsequently, PVDF membranes were sealed with 5% skim milk for 1 hour and then primary antibodies were incubated at 4°C overnight. Goat anti-rabbit secondary antibodies for 1 hour at room temperature, and finally proteins were detected by ECL (YEASEN, Cat# 36208ES76) Prime Western Blotting Detection reagent. CTSG (ZEN BIO, Cat# 513172,1:1,000); E-cadherin (Proteintech, Cat# 20648-1-AP,1:3,000); N-cadherin (Proteintech, Cat# 13769-1-AP,1:3,000); MMP9 (Proteintech, Cat#10375-2-AP,1:3,000); GAPDH (Proteintech, Cat# 66031-1-1g1:3,000).
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9

Western Blot Analysis of Tissue Proteins

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Tissue proteins were extracted using the RIPA Buffer (SparkJade) and protease inhibitor (SparkJade). Proteins were denatured by boiling in SDS-PAGE protein loading buffer (SparkJade). Total proteins were subjected to 5–10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). Proteins were transferred to immobilon-P PVDF membranes (MILLIPORE) using an immunoblot transfer buffer. After incubation at 5% BSA (Biofroxx) for 1 h at room temperature, membranes were incubated with primary antibodies overnight at 4°C. Antibodies purchased from ZEN-BIOSCIENCE (E-cadherin, N-cadherin), Cell Signaling (Vimentin), Proteintech (MMP13), Transgen (GAPDH) were used according to manufacturer’s recommendations. The next day, membranes were incubated with horseradish peroxidase-conjugated anti-mouse or anti-rabbit secondary antibodies (SparkJade or ZEN-BIOSCIENCE) for 1 h at room temperature. After three washing steps, blots were stained using a chemiluminescence system (ECL, YEASEN) and exposed to X-ray film. Details of antibodies are shown in Supplementary Table 1.
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10

Autophagy Regulation in Oral Squamous Cell Carcinoma

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RIPA lysis buffer was used to extract OSCC cell lines’ protein. Furthermore, protein samples were separated, transferred to PVDF membranes (Pall, Cat# BSP0161) and then sealed with 5% skim milk. Subsequently, primary antibodies were incubated at 4℃ for overnight and second antibodies were incubated at room temperature for 1 hour. Finally, protein level was quantified by ECL (YEASEN, Cat# 36208ES76). The antibodies’ information was as follows. ATG12 (ABclonal, Cat#A8033,1:1000); BID (Bioss, Cat#bs‐1153R,1:2000);α‐tublin (Proteintech, Cat# 66031‐1‐1g,1:5000); goat anti‐rabbit (Proteintech, Cat#SA00001,1:10 000); and goat anti‐mouse (Proteintech, Cat#SA00001‐1,1:10 000).
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