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42 protocols using mouse anti β actin monoclonal antibody

1

Antibody Characterization for Autophagy Assays

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The light chain 3 (LC3)-specific monoclonal antibody was purchased from Cell Signaling Technology (Danvers, MA), while the rabbit antibodies against SQSTM1/p62 and beclin-1 were purchased from GeneTex (Irvine, CA). The rabbit anti-early endosome antigen-1 (EEA-1), anti-lysosome-associated membrane protein-1 (LAMP-1), and mouse monoclonal anti-β-actin antibodies were purchased from Abcam (Cambridge, UK), Abgent (San Diego, CA), and Santa Cruz Biotechnology (Dallas, TX), respectively. Simvastatin was purchased from Sigma-Aldrich (St. Louis, MO).
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2

Sulfotransferase Enzyme Assay Protocol

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3′-Phosphoadenosine-5′-phosphosulfate (PAPS), DHEA, dehydroepiandrosterone sulfate (DHEA-S), quercetin, estrone, dithiothreitol (DTT), nimesulide, ibuprofen, mefenamic acid (MFC), and 2,6-dichloro-p-nitrophenol (DCNP) were purchased from Sigma–Aldrich (MO, USA). Bufalin (BF), resibufogenin (RB), cinobufagin (CB), bufotalin (BFT), desacetylcinobufagin (DCB), telocinobufagin (TCB), gamabufagin (GB), 3-epi-DCB (EDCB), 3-epi-RB (ERB), 3-epi-BF (EBF), 9-oxo-cinobufagin (OCB) and AB were isolated from Venenum Bufonis and identified by NMR and ESI- mass spectrometry as described previously29 . Their purity was greater than 98% which were determined by high-performance liquid chromatography with diode-array detection (HPLC/DAD). Rabbit monoclonal anti-SULT2A1 antibody and mouse monoclonal anti-β-actin antibodies were purchased from Abcam (MA, USA). Pooled mixed-gender cytosols obtained from different human organs, pooled mixed-gender experimental animal liver cytosols and individual human liver cytosols were purchased from Rild Research Institute for Liver Diseases (Shanghai, China), Recombinant human SULTs (rhSULTs) were obtained from BD Gentest (MA, USA).
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3

Glycoprotein CLEC4M Expression Analysis

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Cells and human liver tissues were lysed using urea buffer (7 M urea, 2 M thiourea, 3 % CHAPS, 3 % Triton X-100, 1 mM phenylmethylsulfonyl fluoride, 30 mM Tris-HCl, pH 7.4). Protein (50 μg) was treated with N-glycanase (PNGase F) included in the Enzymatic Protein Deglycosylation Kit (Sigma-Aldrich, Saint Louis, MO). Treated and untreated proteins (20-μg samples) were electrophoresed in an SDS-10 % polyacrylamide gel and then transferred to a nitrocellulose membrane. CLEC4M protein was detected using 0.5 μg of goat anti-CLEC4M antibody N17 (Santa Cruz Biotechnology. Inc., Santa Cruz, CA) and 7.5 ng of horseradish-peroxidase-conjugated anti-goat IgG (Zymed Laboratories, San Francisco, CA) per ml. β-actin protein, used as an internal loading standard, was detected using 1 μg of mouse monoclonal anti-β-actin antibody (Abcam, Cambridge, UK) and 0.1 μg of horseradish-peroxidase-conjugated anti-mouse IgG (IBL, Gunma, Japan) per ml. CLEC4M and β-actin were detected using ECL Advance and Plus Western Blotting Detection Systems (GE Healthcare, Buckinghamshire, UK), respectively. Chemiluminescence was detected with a Light-Capture AE-6972 (ATTO, Tokyo, Japan) and analyzed using CS Analyzer version 2.07 software (ATTO).
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4

Efficient RNAi Knockdown of Dab2 and Numb

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RNAi knockdown of Dab2 and Numb in RPTPalpha MEF was performed using ON-TARGETplus Mouse Dab2 and Numb siRNA purchased from Dharmacon (Lafayette, CO, USA). siRNA pools were transfected by electroporation, either separately or in combination, at a final concentration of 50 nM and a cell density of 107 cells ml−1 using the manufacturer's protocol. Efficiency of RNAi knockdown was analysed after 36 h of transfection by western blot analysis using antibodies specific to Dab2 and Numb. Rabbit monoclonal antibodies for Dab2 and Numb (#12906 and #2756, respectively) were purchased from Cell Signaling Technology (Danvers, MA, USA) and were used at a dilution of 1:1,000 for immunodetection. β-actin was used as an internal loading control and was detected using mouse monoclonal anti-β-actin antibody purchased from Abcam (Cambridge, MA, USA). The knockdown efficiency was found to be 70–90%. The full blots are available in Supplementary Fig. 16.
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5

Protein Extraction and Western Blot Analysis of Pancreatic Tumors

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Protein extraction and western blot analysis were carried out as described (Miao et al. 2017 (link)). Briefly, lysate was obtained from specimens of pancreatic tumors and peripancreatic tumor tissues. Specimens were ground using a low-speed tissue homogenizer. All operations were performed on ice. Homogenates were centrifuged (12,000 rpm, 15 min, 4 °C), and the supernatant was collected. The protein content was measured with a BCA protein assay. Subsequently, protein was denatured at 99 °C for 5 min. Equal amounts of protein (30 μg/sample) were loaded onto sodium dodecyl sulfate-polyacrylamide gels, electrophoresed, and transferred onto polyvinylidene difluoride membranes. Membranes were incubated overnight at 4 °C with mouse monoclonal anti-β-actin antibody (1:3000, Abcam, ab5694) and rabbit monoclonal anti-mast cell tryptase antibody (1:500, Abcam, ab151757), followed by anti-mouse IgG-horseradish peroxidase (HRP) (1:5000, Cell Signaling Technology, #7076) and anti-rabbit IgG-HRP (1:5000, Cell Signaling Technology, #7074) antibodies, respectively, for 2 h at room temperature. A chemiluminescence reagent kit (ECL, Bio-Rad, Hercules, CA, USA) was used to detect the immunoreactive bands. Protein bands were normalized to those of β-actin. Image-Pro Plus 6.0 software was used to quantitate the protein content.
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6

Quantification of TLR Protein Levels

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Twenty micrograms of proteins per lane were separated on a polyacrylamide gel (Cat. No. 456-1025; Biorad, Hercules, CA) and then blotted onto a polyvinylidene difluoride membrane. The membranes were blocked with Protein-Free T20 Blocking Buffer (Cat. No. 37573, Thermo Scientific, Logan, UT) and incubated with the following primary antibodies overnight at 4 °C: rabbit monoclonal anti-TLR2 antibody (1:1000 dilution, Cat. No. ab108998, Abcam, Cambridge, MA), rabbit polyclonal anti-TLR4 antibody (1:1000 dilution, Cat. No. ab83444, Abcam, Cambridge, MA), mouse monoclonal anti-TLR9 antibody (1:500 dilution, Cat. No. ab12121, Abcam, Cambridge, MA), and mouse monoclonal anti-β-actin antibody (1:5000 dilution, Cat. No. ab6267, Abcam, Cambridge, MA). Appropriate secondary antibodies were used. Protein bands were visualized by Genesnap version 7.08 and quantified by Genetools version 4.01. The relative protein expression of TLR2, TLR4, and TLR9 was normalized to those of β-actin proteins from the same sample to control for errors in protein sample loading and transferring during Western analysis, respectively. The results from animals under various experimental conditions then were normalized by the mean values of the corresponding control animals.
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7

Quantifying Tyrosine Hydroxylase Levels

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Western blotting and immunodetection protocol was used to determine tyrosine hydroxylase (TH) levels. Briefly, 20 μg of protein was mixed with RIPA buffer and Laemli solution. The samples were boiled at 100 °C for 5 minutes, and were loaded onto a Mini-protean® TGX Stain free™ Precast Gel (BIO-RAD) for 40 minutes at 200 mV. Proteins were then transferred to membrane Mini format, 0.2 um PVDF Trans-Blot® Turbo™ (BIO-RAD). Membranes were blocked for 90 minutes with blocking buffer. After blocking, the membranes were incubated overnight at room temperature with a primary mouse anti-TH monoclonal antibody (1: 1000; Abcam). After washing, membranes were incubated with anti-rabbit IgM secondary antibody AP (1: 10000) for 2 h. Mouse monoclonal anti β-actin antibody (1: 1000: Abcam) served as a control for loading uniformity for each lane and was used to normalize differences in TH expression and protein content. Immunoreactive protein was visualized using a detection kit (NBT/BCIP in carbonate buffer). After exposure, the membranes were scanned.
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8

Immunodetection of ADD1 and TPX2 Proteins

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All reagents used in this study were purchased from Sigma-Aldrich Co. (St. Louis, MO) unless otherwise noted. The rabbit polyclonal anti-ADD1 antibody (Catalog# NBP1-48,611) and the mouse monoclonal anti-TPX2 antibody (Catalog# NBP2-67,265) were purchased from Novus Biologicals. The rabbit polyclonal anti-p-ADD1 (S726) antibody (catalog# orb14892) was purchased from Biorbyt. Anti-α-tubulin-FITC (Catalog# F2168) and anti-γ-tubulin (Catalog# T6557) mouse monoclonal antibodies were obtained from Sigma-Aldrich. The mouse monoclonal anti-β-actin antibody (Catalog# ab49900) was purchased from Abcam. Alexa Fluor® 594-conjugated goat anti-rabbit IgG (H + L) (Catalog# A-11037) and Alexa Fluor® 647-conjugated goat anti-rabbit IgG (H + L) (Catalog# A-31633) were produced by Thermo Fisher Scientific Co.; TRITC conjugated goat anti-mouse IgG (H + L) (Catalog# ZF-0313) was purchased from Zhongshan Golden Bridge Biotechnology Co., LTD. Goat anti-rabbit IgG (Catalog# 1,706,515) and goat anti-mouse IgG (Catalog# 1,706,516) horseradish peroxidase (HRP)-conjugated antibodies were purchased from Bio-Rad.
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9

LPS and HSP Interaction Signaling

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The following materials and antibodies were purchased: LPS from Escherichia coli 0128:B12 (Sigma-Aldrich); LPS from P. gingivalis (InvivoGen); recombinant human HSP70 (Stressgen; endotoxin activity, <0.05 endotoxin units (EU)/μg); recombinant bovine HSC70 (Stressgen; <0.05 EU/μg); recombinant bovine HSC70 ATPase fragment (Enzo Life Sciences; 0.1 EU/μg); V8 protease (Roche); 15-deoxyspergualin (DSG) (Spanidin® Inj.; Nippon Kayaku); mouse monoclonal anti-TLR4 (HTA125) and anti-TLR2 (TL2.1) antibodies (Hycult Biotechnology); mouse monoclonal anti-CD14 (MY4) antibody (Beckman Coulter); rabbit polyclonal anti-p44/42, anti-p38, anti-phosphorylated p38, anti-phosphorylated IκB-α, mouse monoclonal anti-phosphorylated p44/42 antibodies (Cell Signaling); mouse monoclonal anti-JUN-N-terminal protein kinase (JNK) (D-2), anti-phosphorylated JNK (G-7), anti-IκB-α (H-4) antibodies (Santa Cruz Biotechnology); and mouse monoclonal anti-β-actin antibody (Abcam). Endotoxin levels of all materials used were determined using a ToxinSensor chromogenic LAL endotoxin assay kit (GenScript), and the resultant level was low (~0.1 EU/μg). The LPS, bovine serum albumin (BSA), HSP70, HSC70, and the HSC70 ATPase fragment were heated at 95°C for 20 min.
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10

Western Blot Analysis of Aquaporin-1 Expression

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Samples from rodent submandibular glands were homogenized in 400 μl of CelLyticTMM Cell Lysis Reagent (Sigma, St Louis, MO, USA). HSG cells and A5 cells from (5 × 106 cells) were lysed with 500 μl of the same reagent. Thereafter, 30 μg of protein, obtained from cell supernatants, were mixed with NuPAGE LDS Sample Buffer (4 ×; Invitrogen) and loaded onto SDS-PAGE gels for western blottings using rabbit polyclonal anti-rat AQP1 antibody (Alpha Diagnostic Intl, Inc., San Antonio, TX, USA) and mouse monoclonal anti-β-actin antibody (Abcam, Inc.) for detection. Densitometric measurements were performed using ImageJ software (National Institutes of Health, Bethesda, MD, USA). The hAQP1 protein band was normalized to β-actin, which was used as an internal control.
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