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15 protocols using anti muc1 c hm 1630 p1abx

1

Immunoblotting of Cellular Signaling Proteins

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Total lysates prepared from subconfluent cells were immunoblotted with anti-MUC1-C (HM-1630-P1ABX, 1:400 dilution; Thermo Fisher Scientific), anti-JUN (3742, 1:1,000; Cell Signaling Technology), anti-ARID1A (12354, 1:1,000; Cell Signaling Technology), anti-NOTCH1 (3608, 1:1,000; Cell Signaling Technology), anti-β-actin (A5441, 1:100,000; Sigma), and anti-GAPDH (5174, 1:5,000; Cell Signaling Technology).
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2

Immunoblotting Analysis of DNA Damage Signaling

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Lysates were subjected to immunoblotting with anti-MUC1-C (HM-1630-P1ABX; Thermo Fisher Scientific), anti-β-actin (A5441; Sigma), anti-lamin A/C (4777), anti-γH2AX (9718), anti-ATR (2790), anti-pCHK1 (2348), anti-CHK1 (2360), anti-pBRCA1 (9009), anti-BRCA1 (14823), anti-BMI1 (6964), anti-H2AUb1 (8240), anti-H2A (12349), anti-EZH2 (5246), anti-H3K27me3 (9733), anti-H3 (9715), anti-H3K56ac (4243), anti-PARP1 (9532) (Cell Signaling Technology, Danvers, MA, USA), anti-pATR (GTX128145; GeneTex, Irvine, CA, USA) and anti-FANCD2 (ac108928; Abcam, Cambridge, CB4, 0Fl, UK). Signal intensity was determined using ImageJ 1.51k software (NIH, Bethesda, MD, USA).
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3

Chromatin Immunoprecipitation Assay Protocol

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Formaldehyde cross-linked and sheered soluble chromatin was precipitated with pre-cleared magnetic dynabeads (ThermoFisher Scientific) and 2 μg/ml of anti-MUC1-C (HM-1630-P1ABX; ThermoFisher Scientific), anti-E2F1 (3742; CST), anti-STAT3 (9139; CST), anti-BRG1 (ab110641; abcam), anti-ARID1A (12354, 2 μg/ml; CST) or a control non-immune IgG (Santa Cruz Biotechnology). The DNA-antibody precipitates were reverse cross-linked at 65°C for 18 h. DNAs were purified using gel extraction columns (QIAGEN, Germantown, MD, USA) and analyzed by qPCR using the Power SYBR Green PCR Master Mix and the ABI Prism 7300 sequence detector (Applied Biosystems). Data are reported as relative fold enrichment (10 (link)). Primers used for ChIP qPCR are listed in Supplementary Table 2.
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4

Immunoblot Analysis of Cellular Proteins

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Total lysates prepared from non-confluent cells were subjected to immunoblot analysis using anti-MUC1-C (HM-1630-P1ABX, 1:1000 dilution; Thermo Fisher Scientific), anti-β-actin (A5441, 1:5000 dilution; Sigma-Aldrich), anti-GAPDH (#2118, 1:1000; CST), anti-NF-κB p65 (ab32536, 1:1000 dilution, Abcam, Cambridge, MA, USA), anti-GPX4 (#52455, 1:1000 dilution, CST), anti-GSR (18257-1-AP, 1:2000 dilution; PROTEINTECH, Rosemont, IL, USA), anti-LRP8 (NB100-2216, 1:1000 dilution; Novus Biologicals, Centennial, CO, USA) and anti-CD133 (#5860, 1:1000 dilution, CST).
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5

Immunoblotting Analysis of Stem Cell Markers

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Total lysates prepared from subconfluent cells were immunoblotted with anti-MUC1-C (HM-1630-P1ABX, 1:400 dilution; ThermoFisher Scientific, Waltham, MA, USA), anti-PBRM1 (A301–591A, 1:10000; Bethyl Laboratories, Montgomery, TX, USA), anti-ARID2 (82342, 1:1000; Cell Signaling Technology (CST), Danvers, MA, USA), anti-BRD7 (15125, 1:1000; CST), anti-β-actin (A5441, 1:100,000; Sigma), anti-E2F1 (3742, 1:1000; CST), anti-SLC7A11/xCT (ab175186, 1:1000; abcam, Cambridge, MA, USA), anti-G6PD (8866, 1:1000; CST), anti-PGD (13389, 1:1000; CST), anti-BRG1 (ab110641, 1:10000; abcam, Cambridge, MA, USA), anti-ARID1A (12354, 1:500; CST), anti-OCT4 (2750, 1:1000 dilution; Cell Signaling Technology), anti-SOX2 (3579, 1:1000 dilution; Cell Signaling Technology), anti-KLF4 (12173, 1:1000 dilution; Cell Signaling Technology), anti-MYC (ab32072, 1:1000 dilution; Abcam, Cambridge, MA), anti-NANOG (4903, 1:1000; CST), anti-NOTCH1 (3608. 1:1000; CST), anti-BMI1 (6964, 1:1000, CST), anti-CD44 (KO601, 1:1000; TransGenic, Tokyo, Japan), anti-CD133 (5860, 1:1000; CST) and anti-GAPDH (5174, 1:5000, CST).
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6

Immunoblot Analysis of Cell Proteins

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Total protein lysates from cultured cells were subjected to immunoblot analysis using anti-MUC1-C (HM-1630-P1ABX, 1:100 dilution; Thermo Fisher Scientific), anti-MICA (ab150355, 1:1000 dilution; Abcam), anti-MICB (77 296S, 1:1000 dilution; Cell Signaling Technology (CST)), anti-β-actin (A5441, 1:5000 dilution; Sigma-Aldrich), anti-CD9 (13 174S, 1:1000 dilution; CST), anti-CD63 (ab59479, 1:1000 dilution; Abcam), anti-CD81 (56 039S, 1:1000 dilution; CST), anti-ERp5 (1:2500; 18 233–1-AP, Proteintech, Rosemont, Illinois, USA) and anti-RAB27A (69 295S, 1:1000 dilution; CST).
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7

Immunoblotting and Immunoprecipitation of Nuclear Proteins

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Total and nuclear lysates prepared from subconfluent cells were subjected to immunoblot analysis using anti-MUC1-C (#HM-1630-P1ABX; Thermo Fisher Scientific, Waltham, MA, USA), anti-MYC (#ab32072; Abcam), anti-ERα (#ab108398; Abcam) anti-β-actin (#A5441; Sigma), anti-MTA1 (#5647), anti-MBD3 (#14540), anti-CHD4 (#11912), anti-HDAC1 (#5356), anti-SOX2 (#D6D9), anti-KLF4 (#D1F2), anti-BMI1 (#D20B7), anti-CD44 (#156-3C11), anti-OCT4 (#2750S; Cell Signaling Technology, Danvers, MA, USA). Nuclear proteins were immunoprecipitated in the absence and presence of 50 μg/ml ethidium bromide (EtBr; #15585-011, Thermo Fisher Scientific) as described (25 (link)).
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8

Immunoblotting of Cancer Stem Cell Markers

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Whole cell and nuclear lysates were prepared in RIPA buffer containing protease inhibitor cocktail (Thermo Scientific, Waltham, MA, USA). Immunoblotting was performed with anti-MUC1-C (HM-1630-P1ABX; Thermo Fisher Scientific), anti-TWIST1 (ab50887), anti-NF-κB p65 (ab16502), anti-ALDH1 (ab134188) (Abcam, Cambridge, MA, USA), anti-pSTAT3 (#9145), anti-STAT3 (#9139), anti-ZEB1 (#3396), anti-SNAIL (#3879), anti-SOX2 (#3579), anti-ABCB1 (#13342), anti-N-cadherin (13116S), anti-BMI1 (6964P), anti-CD44 (5640S), anti-GAPDH (5174S) (Cell Signaling Technology, Danvers, MA, USA) and anti-β-actin (A5441; Sigma).
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9

Chromatin Immunoprecipitation Assay for Transcription Factors

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Formaldehyde cross-linked and sheered soluble chromatin was precipitated with pre-cleared magnetic dynabeads (ThermoFisher Scientific) and 2 μg/ml of anti-MUC1-C (HM-1630-P1ABX; ThermoFisher Scientific), anti-E2F1 (3742; CST), anti-NRF2 (12721; CST), anti-PBRM1 (8183; CST) or a control non-immune IgG (Santa Cruz Biotechnology). The DNA-antibody precipitates were reverse cross-linked at 65oC for 18 h. DNAs were purified using gel extraction columns (QIAGEN, Germantown, MD, USA) and analyzed by qPCR using the Power SYBR Green PCR Master Mix and the ABI Prism 7300 sequence detector (Applied Biosystems). Data are reported as relative fold enrichment 12. Primers used for ChIP qPCR are listed in Supplementary Table 2.
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10

Immunoblotting of Cell Lysates

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Total lysates prepared from subconfluent cells were immunoblotted with anti-MUC1-C (HM-1630-P1ABX, 1:400 dilution; Thermo Fisher Scientific), anti-JUN (3742, 1:1000; Cell Signaling Technology (CST), Danvers, MA, USA), anti-ARID1A (12354, 1:1000; CST), anti-NOTCH1 (3608, 1:1000; CST), anti-β-actin (A5441, 1:100,000; Sigma) and anti-GAPDH (5174, 1:5000; CST).
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