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83 protocols using 8 channel sense head coil

1

Resting-State fMRI Acquisition Protocol

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Imaging data were collected on a 3T, Phillips Achieva whole-body scanner, with an 8 channel Philips SENSE head coil (Philips Medical Systems). Functional images were obtained with a single-shot T2*—weighted echo planar imaging sequence. Imaging sequence consisting of 250 volumes with: repetition time (TR): 2000 ms; echo time (TE): 30 ms; 3mm isotropic voxels; field of view (FOV): 240 x 240 reconstructed into 80 x 80; flip angle 80°; 38 transverse slices with 0 gap and scanned in a default interleaved sequence. The slices where collected starting from the bottom of the brain, collecting all the odd number slices first (1, 3, 5…) and then collecting all the even number slices (2, 4, 6…). The total scan time was 8 minutes. Participants were instructed to close their eyes and to rest comfortably, without moving or falling asleep, during the functional scan. For the 3D scan, an anatomical image with: TR: 10462 ms; TE: 54 ms; 2mm isotropic voxels; FOV: 224 x 224; flip angle 90°: 60 transverse slices with 0 gap and scanned in the default interleaved sequence.
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2

Whole-Brain fMRI Acquisition Protocol

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A 3 Tesla Philips Achieva whole body MR scanner was used for fMRI data acquisition, with an 8-channel Philips SENSE head coil (Philips Medical Systems, Best, the Netherlands). A T2* echo-planar imaging sequence (repetition time (TR), 2250 ms; echo time (TE), 30 ms; FOV, 240*240*114; flip angle, 80°; interleaved acquisition) with 38 slices and a voxel size of 3*3*3 mm were taken while participants performed the task. One scanning session consisted of 381 volumes, taking approximately 14 minutes and 17 seconds. An additional 5 dummy scans were taken before the experiment started to allow the MR signal to reach equilibrium. Anatomical T1 images with 170 slices and a voxel size of 1*1*1mm were recorded for registration of the functional images (TR, 6.6 ms; TE, 3.1 ms; FOV 256*256, flip angle, 8°).
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3

Resting-state fMRI Acquisition Protocol

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Imaging data were collected on a 3T, Phillips Achieva whole-body scanner, with an 8 channel Philips SENSE head coil (Philips Medical Systems). Functional images were obtained with a single-shot T2*—weighted echo planar imaging sequence. Imaging sequence consisting of 250 volumes with: repetition time (TR): 2000 ms; echo time (TE): 30 ms; 3mm isotropic voxels; field of view (FOV): 240 x 240 reconstructed into 80x80; flip angle 80°; 38 transverse slices with 0 gap and scanned in a default interleaved sequence. The slices where collected starting from the bottom of the brain, collecting all the odd numbered slices first (1,3,5…) and then collecting all the even number slices (2,4,6..). The total scan time was 8 minutes. Participants were instructed to close their eyes and to rest comfortably, without moving or falling asleep, during the functional scan. For the 3D scan, an anatomical image with: TR: 10462 ms; TE: 54 ms; 2mm isotropic voxels; FOV: 224 x 224; flip angle 90°: 60 transverse slices with 0 gap and scanned in the default interleaved sequence.
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4

Functional MRI Acquisition Protocol

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Images were recorded with a 3 Tesla Achieva MRI scanner (Philips, Eindhoven) equipped with an 8-channel Philips SENSE head coil. Functional images were acquired using a T2*-weighted single-shot echo-planar sequence (TR/TE = 2100/30 ms, flip angle = 80º; FOV = 240 x 240 mm, matrix = 80 x 80). For each participant, 36 axial slices covering the whole brain were acquired in an interleaved order, aligned with the AC-PC line (voxel size = 3 x 3 x 3 mm, slice gap = 0.5 mm).
The five first volumes of each run were discarded to avoid saturation effects.
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5

3T MRI Brain Lesion Quantification Protocol

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Participants underwent 3T brain MRI on a Philips Achieva 3T scanner with an 8-channel SENSE head coil. The scan protocol included 3D T1-weighted gradient echo, 3D T2-weighted turbo spin echo, 3D T2*-weighted gradient echo, and 3D fluid-attenuated inversion recovery (FLAIR) scan (sequence details eTable 1, links.lww.com/WNL/D397). Lacunes (on T1-weighted, T2-weighted, and FLAIR scan) were manually counted, and microbleed counting (on T2*-weighted scans) was supported by semiautomated rating software.16 (link) Ratings were performed by 2 trained raters (HvdB and NAW who had a good interrater reliability of 0.8 or more and resolved discrepancies in a consensus meeting) according to the STRIVE-1 criteria17 (link) (note: the criteria for these particular lesions are the same in the updated STRIVE-2).18 (link) Segmentations of WMH, lacunes, intracranial volume, and total brain volume were acquired as previously published.13 (link)
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6

Resting-state fMRI Acquisition Protocol

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Anatomical T1-weighted and functional T2*-weighted MR images were collected with a 3 Tesla Philips Achieva scanner (Philips Medical Systems, Best, NL), using an 8-channel Sense head coil (sense reduction factor = 2). The MR session included a 3D T1-weighted image (TR = 25 ms, TE = 4.6 ms, flip angle = 30°, in-plane resolution = 0.89 mm × 0.89 mm, slice thickness = 1 mm, 220 contiguous axial slices) and a “resting-state” fMRI scan (200 functional volumes including 30 contiguous axial slices, parallel to the AC–PC plane; T2*-weighted echo-planar imaging (EPI) pulse sequence; TR = 3000 ms, TE = 35 ms, slice thickness = 4 mm). The latter lasted 10 min during which participants lied quietly, awake but with their eyes closed, with the head fixed by foam pads to reduce movements.
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7

Multimodal MRI Acquisition Protocol

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Images were acquired in a Philips Achieva 3T scanner (Amsterdam, The Netherlands) using an 8-channel SENSE head coil. The MP-RAGE and the DTI sequence were acquired during the same scanning session. No single group was scanned on a schedule or time different than the other groups, thereby avoiding bias related to temporally dependent scanner calibration. The MP-RAGE volume was collected in sagittal orientation with in-plane resolution of 256 × 256 and 1 mm slice thickness (isotropic voxels of 1 mm3; TR = 650 ms, TE = 3.2 ms, FOV 256 mm, flip angle 8°, SENSE factor = 1).
The diffusion data were acquired using a single-shot spin-echo EPI pulse sequence (TE = 90 ms, TR = 8609 ms, SENSE factor = 2.5, 5 min acquisition) with 32 diffusion weighted (b-factor = 850 s/mm2, anterior–posterior fold-over direction) and three non-diffusion volumes (b-factor = 0 s/mm2; averaged in scanner to a single B0 volume). Each volume contained 66 slices (thickness = 2 mm, gap = 0 mm) acquired in the axial plane, with a reconstructed matrix size of 128 × 128 and FOV 230 mm, resulting in voxel size 1.8 × 1.8 × 2 mm. Fat suppression was achieved using a standard SPIR (spectral pre-saturation with inversion recovery) technique. The sequence was repeated twice for each subject and the datasets were averaged to increase signal to noise ratio.
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8

Diffusion Tensor Imaging of Preterm and Term Neonates

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Each MRI of preterm and term neonates was acquired with a 3T Philips Achieva MR system (Cleveland) at Children's Medical Center at Dallas with an 8-channel SENSE head coil. The neonates were fed before the MRI scan and wrapped with a vacuum immobilizer to minimize motion. Extra foam padding was applied to reduce the sound of the scanner in addition to the earplugs and the earphones. The DTI imaging parameters were as follows: b-value = 1,000 s/mm2, 30 linearly independent diffusion encoding directions (Jones et al., 1999 (link)), one non-diffusion weighted (b0) image, TE = 78 ms, TR = 6,850 ms, in-plane FOV = 168 × 168 mm2, in-plane imaging resolution = 1.5 × 1.5 mm2, slice thickness = 1.6 mm, and number of slices = 60. The axial DWI image dimension was 256 × 256 after reconstruction. Two repetitions were performed to improve SNR. The total acquisition time was 11 min. DWI volumes that were corrupted due to artifacts or motion were replaced with another DTI repetition during postprocessing.
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9

Diffusion MRI Acquisition and Analysis

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All data of participants at baseline were acquired on Philips 3.0 T MRI scanner equipped with a 8-channel SENSE head-coil. 32 non-collinear (b value = 1000 s/mm2)-direction diffusion images and a no-diffusion weighting (b0) were collected using echo-planar imaging sequence with the following parameters: field of view (FOV) = 256 × 256, TR/TE = 10086/91 ms, 2 mm slice thickness with no gap, matrix = 128 × 128, voxel size = 2 × 2 × 2 mm3. All images were corrected for eddy current distortion and head movement by registering diffusion-weighted images to b0 and adjusting rotations of b-matrix using FMRIB’s diffusion toolbox (FDT), part of FMRIB Software Library (FSL). FA and MD were calculated by DTIfit (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT).
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10

T1-Weighted Hippocampal Subfield Imaging

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A Phillips 3T Achieva scanner with an 8 channel SENSE head coil was used for imaging. A 3D T1 FFE sequence (Lin, Celik, and Paczynski, 1999 (link)) was implemented to acquire T1-weighted pre- and post-contrast images with the following parameters: TR = 20 ms, TE = 3.98 ms, Field-of-View = 256 × 256 mm2, Spatial resolution = 0.80 × 0.80 × 4 mm3, slices = 30, SENSE factor = 2.5. A power injector (Medrad®, PA, USA) was used for contrast administration (Magnevist® — Gadopentate dimeglumine, Bayer Schering Pharma, Germany, 0.1 mmol/kg) and subsequent 40 ml saline flush through an 18G needle in the antecubital vein. After contrast administration, post-contrast images were acquired approximately 4 min later. To allow for accurate segmentation of the hippocampal subfields (Moreno, 2007 (link)), images were acquired perpendicular to the long axis of the hippocampus. For each subfield, the regions of interest (ROIs) were centered to avoid border regions with neighboring subfields. We compared the fractional increase in tissue signal after the contrast agent had thoroughly perfused the microvasculature and equilibrated in the blood.
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