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3 protocols using cathepsin b from bovine spleen

1

Characterization of Cysteine Protease Inhibitors

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Hemin chloride, chloroquine, quinacrine, amodiaquine, mefloquine, 8-hydroxyquinoline, quinine, quinidine and the β-carbolines norharman, tryptoline, harman, and harmine were obtained from Sigma-Aldrich. Indazole compounds 1,1´-[2,2´-biphenyldiyl)bismethylene]bis(5-nitro-1H-indazol-3-ol) (DIM-32) and 1,1´-(o-xylylene)bis(5-nitro-1H-indazol-3-ol) (DIM-5) were previously synthetized45 (link). 3,3′,5,5′-Tetramethylbenzidine (TMB), 2,2′-azinobis(3-ethylbenzthiazoline-6-sulphonic acid) (ABTS) and tween 20 were obtained from Sigma and cysteine from Merck. DMSO and hydrogen peroxide (H2O2) were from Scharlau and Panreac, respectively. Globin was obtained from bovine hemoglobin (Sigma) by precipitation in acetone-0.1% HCl at low temperature89 (link),90 (link), and lab-stored crystallized and lyophilized bovine serum albumin (BSA) was from Sigma. cysteine proteases: papain from Carica papaya, ficin from fig tree latex and cathepsin B from bovine spleen were obtained from Sigma. The peptide Z-Phe-Arg-AMC was purchased from Bachem, and 7-amino-4-methylcoumarin (AMC) from Sigma.
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2

Therapeutic Protease Characterization

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Five available proteases with therapeutic importance were used: pure elastase from human leukocytes (Sigma-Aldrich, St. Louis, MO, USA E8140), cathepsin B from bovine spleen (cysteine-peptidase) (Sigma-Aldrich, C6286), α-chymotrypsin (serine peptidase) from bovine pancreas (Sigma-Aldrich, St. Louis, MO, USA C3142), collagenase from Clostridium histolyticum (metalloproteinases) (Sigma-Aldrich, St. Louis, MO, USA C2674), and thrombin from bovine plasma (serine protease) (Sigma-Aldrich, St. Louis, MO, USA T7513). Six commercially available proteases were also used: esperase from Bacillus sp. (serine-type protease) (Novozyme, Sigma-Aldrich, St. Louis, MO, USA P5860), proteinase K from Tritirachium album (serine protease) (Sigma-Aldrich, St. Louis, MO, USA P2308), subtilisin from Bacillus licheniformis (Subtilisin A is a member of the Serine S8 endoproteinase family) (Sigma-Aldrich, St. Louis, MO, USA P5380), and Aspergillus oryzae (fungal protease/peptidase complex produced by submerged fermentation of a selected strain of Aspergillus oryzae that contains both endoprotease and exopeptidase activities) (Sigma-Aldrich, St. Louis, MO, USA P6110), Bacillus licheniformis (endoprotease of the serine type) (Sigma-Aldrich, St. Louis, MO, USA P4860), and Bacillus sp. (a serine-type protease) (Sigma-Aldrich, St. Louis, MO, USA P3111).
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3

Cathepsin B Protease Activity Assay

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To study Cathepsin B's protease activity50 (link), purified Cathepsin B from bovine spleen (Sigma) (0.5 unit/ml) was incubated with or without general protease inhibitor Leupeptin (25 μM) in buffers of different pH. 25 mM MES with 5 mM DTT was used as buffer for pH 5.1 and 0.1 M PIPES with 5 mM DTT, 1 mM CaCl2, 2.7 mM KCl and 0.5 mM MgCl2 was used as buffer for pH 7.4. Rates of hydrolysis of the fluorogenic substrates: Cath B substrate (CV-RR2, Enzo Lifesciences or ES008, R&D) were measured at 37°C using a FLUOstar Optima fluorescent plate reader (BMG Labtech). Slopes of the initial rate of reaction were determined by curve-fitting applications in Microsoft Excel and expressed relative to untreated controls51 (link).
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