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Smac diablo

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Smac/DIABLO is a mitochondrial protein that promotes apoptosis (programmed cell death) by binding to and inhibiting inhibitor of apoptosis proteins (IAPs). It plays a key role in the intrinsic apoptosis pathway.

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14 protocols using smac diablo

1

Apoptosis Signaling Pathway Analysis

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Cells and tumor tissues were lysed using RIPA buffer, and then the lysates were incubated with antibody of Apaf-1 or Smac/DIABLO (Cell Signaling Technologies, USA) overnight at 4°C. Subsequently, the protein A agarose beads was added and incubated for 2 h. After washing the beads with cold RIPA buffer, proteins were removed from the beads by boiling in sodium dodecyl sulfate (SDS) sample buffer. For western blot analysis, the extracted proteins were separated by 12.5 % sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a PVDF membrane (Millipore, USA). The membranes were blocked with 5 % skim milk for 1 h at room temperature and then incubated overnight at 4°C with the primary antibodies (MCL-1, cleaved caspase-9, cleaved caspase-7, cleaved caspase-3, cytochrome C, second mitochondria-derived activator of caspase / direct IAP binding protein with low pI (Smac/DIABLO), apoptotic peptidase activating factor 1 (Apaf-1), X-linked inhibitor of apoptosis (Xiap) and β-actin, all of them purchased from Cell Signaling Technology). Subsequently, the membranes were incubated with a horseradish peroxidase (HRP)-conjugated secondary antibody (Cell Signaling Technology) for 2 h at room temperature. Signals were detected using enhanced chemiluminescence reagents (Thermo, USA).
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2

Western Blot Analysis of Apoptosis Markers

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Whole cell lysis was carried out using Cell Lysis Buffer (Cell Signaling Technology, MA, USA) according to the manufacturer’s protocol, with the addition of Protease Inhibitor Cocktail (BioShop, Canada). Total protein was quantified with Pierce BCATM Protein Assay Kit (Thermo Fisher Scientific, MA, USA). Protein extract was separated on a polyacrylamide gel and transferred to a nitrocellulose filter (Bio-Rad, CA, USA) by wet-electroblotting. Subsequently, the immobilized proteins were incubated with the appropriate primary antibody: cytochrome c (#11940), Smac/Diablo (#2954), HtrA2/Omi (#9745) and β-Tubulin (#2128) (Cell Signaling Technology, MA, USA). Finally, the appropriate secondary antibody conjugated with horseradish peroxidase (#7074, Cell Signaling Technology, MA, USA) was applied. Detection was executed by chemiluminescence, using Clarity™ Western ECL Substrate (Bio-Rad, CA, USA). Western blot stripping buffer (Thermo Scientific, MA, USA) was used to remove the antibodies from the membrane.
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3

Smac/DIABLO Immunoprecipitation Protocol

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The cytoplasmic fraction was collected as described above, and then the lysates were incubated with primary antibody of Smac/DIABLO (Cell Signaling Technologies, USA) overnight at 4 °C followed by 2 h of incubation of protein A agarose beads. After washing the beads with cold digitonin lysis buffer, proteins were removed from the beads by boiling in sodium dodecyl sulfate (SDS) sample buffer and analyzed by western blotting analysis.
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4

Immunoblotting of Apoptosis Markers

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For the immunoblotting of P53, Bcl-2, Bax, and caspase-3, proteins were extracted from whole cell lysates using RIPA buffer (Cell Signaling) following manufacturer's instructions. For the immunoblotting of Cytochrome c and Smac, cytoplasmic proteins were extracted using NE-PER Nuclear Protein Extraction Kit (Thermo Fisher). The proteins separated by SDS gel were transferred to 0.22 μm PVDF membrane (Bio-Rad) at 15 V for 2 h by using semidry transfer set (CBS Scientific). After blocking the membranes with 5% nonfat dry milk in Tris-buffered saline with Tween (TBST) (150 mM NaCl, 15 mM Tris-HCl (pH 7.5), and 0.1% Tween 20) for about 2 h, proteins were probed with primary antibody against Bcl-2 (Bioworld), caspase-3 (Bioworld), P53 (Bioworld), Bax (Bioworld), Smac/Diablo (Cell Signaling), Cytochrome c (Cell Signaling), or β-actin antibody (Santa Cruz) and then incubated with a secondary antibody conjugated with horseradish peroxidase (Cell Signaling). Membranes were washed by TBST after each antibody probing. Signals were detected by using Super Signal West Pico chemiluminescent substrate (Thermo Scientific). Integrated optical density (IOD) quantification was performed using Gel-Pro Analyzer 4.0.
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5

Furanodienone and 5-FU Cancer Assays

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Furanodienone (⩽98%) and 5-FU were purchased from Shanghai Yuanye Bio-Technology Co., Ltd, (Shanghai, China). A stock solution of Furanodienone at 4 mM was prepared in dimethyl sulfoxide (DMSO; Sigma, St. Louis, MO, USA) and stored at −20 °C, while that of 5-FU was prepared in phosphate-buffered saline (PBS) and stored at 4 °C. Dulbecco’s modified Eagle’s medium (DMEM) and 1 × (PBS, pH 7.4) were obtained from Jinuo Biotechnology (Hangzhou, China). Caspase-3, -8 and -9 Activity Assay Kits, Reactive oxygen species Assay Kit, BCA protein assay Kit and Cell Cycle and Apoptosis Analysis Kits were purchased from Beyotime Biotechnology (Suzhou, China). The NAC was purchased from Sigma Chemical Co. (St. Louis, MO, USA), and inhibitors z-VAD-fmk, z-LEHD-fmk, U0126, SP600125 and SB202190 were afforded by Shanghai Qiangzhi Bio-Technology Co., Ltd, (Shanghai, China). The primary antibodies: p21Cip1, CDK 4, cyclin D1, CDK 6, CDK 2, cyclin E, caspase-8, -3 and -9, cleaved caspase-8, -3 and -9, cleaved PARP, Bax, Bcl-2, Bcl-xl, cytochrome c, AIF, Smac/DIABLO, survivin, p-p38, p38, p-JNK, JNK, p-ERK, ERK, α-tubulin and GAPDH were afforded by Cell Signaling Technology (Beverly, MA, USA).
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6

Phytochemical Modulation of PI3K/Akt Pathway

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Raw DML plants were obtained from the Xinjiang Institute of Materia Medica, Xinjiang, China. These plants were authenticated by Prof. Jiang He of Xinjiang University of Chinese Medicine. Radio-immunoprecipitation assay (RIPA) lysis buffer was obtained from Beyotime Institute of Biotechnology (Beijing, China). 2,3,5-Triphenyl tetrazolium chloride (TTC) was purchased from Sigma (Beijing, China). Malondialdehyde (MDA), lactate dehydrogenase (LDH), superoxide dismutase (SOD), and serum creatinine kinase MB (CK-MB) assay kits were purchased from Jiancheng Bioengineering Institute (Nanjing, China). LY294002 (PI3K inhibitor) was purchased from Abcam (Beijing, China). Terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) assay kit was purchased from Boster Biological Technology co. Itd (Wuhan, China). The primary antibodies against phosphorylation of PI3K (p-PI3K), PI3K, phosphorylation of Akt (p-Akt), Akt, Bcl-2, Bax, caspase-3, cleaved caspase-3, caspase-7, Caspase-9, Smac/Diablo, HrtA2/Omi, XIAP, GAPDH, and β-actin were purchased from Cell Signaling Technology, Inc (CST, USA). Goat anti-rabbit secondary antibodies were purchased from the Zhongshan Company (Beijing, China).
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7

Nanoparticle-Encapsulated Tetrandrine Delivery

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Iron(iii) acetylacetonate, chloroform, oleic acid and oleylamine were purchased from Strem Chemicals, Inc. Postfach, Kehl, Germany. 1,2-Hexadecanediol and benzyl ether were obtained from Sigma-Aldrich, St. Louis, MO, USA. PLGA (Resomer RG 503, MW: 24 000–38 000 Da) was purchased from Evonik Industries, Germany. Tetrandrine (Tet, >98%) was obtained from Wuhan Dinghui Chemical Co., Ltd, China. Polyvinyl alcohol (PVA, Mowiol 4-88) was obtained from Kuraray Specialties Europe GmbH, Frankfurt, Germany. The PromoKine Annexin V-FITC Detection Kit was purchased from PromoCell GmbH, Heidelberg, Germany. BCA protein assay kits were purchased from BioRad, Hercules, USA. The antibodies for Cathepsin B, Bcl-2, Smac/Diablo, XIAP, Cytochrome C, Caspase 3, β-actin and GAPDH were obtained from Cell Signaling Technology, Danvers, MA, USA.
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8

Kinase Inhibitor Evaluation Protocol

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Ribociclib, palbociclib, AZD5438, and dinaciclib were from Selleck (Houston, TX). All other chemicals used in this study were from Sigma (St. Louis, MO). The following antibodies were used: β-actin (#4970), Bcl-xL (#2764), phospho-Akt (#4051), total Akt (#9272), cyclin B1 (#4135), cyclin D1 (#2922), cyclin D3 (#2926), CDK4 (#2906), CDK6 (#3136), KU70 (#4104), PTEN (#9559), Phospho-RB (#9307), Bak (#3814), Bax (#2774), Mcl-1 (#4572), Cytochrome c (#4280), smac/DIABLO (#2954), total H2AX (#2595), phospho-H2AX (#2577), HSP70 (#4873), caspase-3 (#9664), caspase-7 (#9494), caspase-8 (#9746), caspase-9 (#9501), caspase-10 (#9752), and PARP (#9546) were from Cell Signaling Technology (Beverly, MA). AIF (sc-5586) was from Santa Cruz Biotechnology (Santa Cruz, CA). Monoclonal anti-Bax (#556467) and RAD51 (#ab63801) were from BD Pharmingen (San Diego, CA) and Abcam (Cambridge, MA), respectively.
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9

Apoptosis Pathway Protein Analysis

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The total proteins of 293T cells were extracted with lysis buffer [20 mM Tris-HCl, 137 mM NaCl, 10% glycerol, 1% Triton X-100, 2 mM EDTA, supplemented with 0.1% PMSF (Beyotime, China)]. The lysates were shaken on ice for 15 min, and the protein concentration was ascertained by BCA assay. The cell lysates were mixed with 2× SDS sample loading buffer and subjected to 10% or 12% (dependent on predicted protein molecular weight) SDS polyacrylamide gel electrophoresis analysis. The proteins were transferred to a PVDF membrane. After blocking with 5% skim milk in TBS-T (0.12 M Tris-base, 1.5 M NaCl, 0.1% Tween-20), the membrane was incubated with primary antibodies, targeting Cleaved-caspase-3, Cleaved-caspase-9, Cleaved-caspas-8, Cleaved-PARP, Bax, Bak, Bid, Smac/Diablo, cIAP-2, Bcl-2, and Rb (all purchased from Cell Signaling Technologies, Danvers, MA, United States), at 4°C overnight. The blots were washed three times in TBST (20 mM pH 7.4 Tris-HCl, 150 mM NaCl, 0.05% Tween-20) and incubated with secondary goat anti-rabbit/mouse horseradish peroxidase-conjugated IgG. The membranes were washed thrice with TBST and the protein was visualized using an ECL chemiluminescent substrate according to the manufacturer’s instructions (Pierce-Thermo Fisher Scientific, Waltham, MA, United States).
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10

Liver Protein Extraction and Western Blot

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Snap frozen livers were homogenized in lysis buffer containing 25 mM HEPES, 5 mM EDTA, 0.1% CHAPS, and 1 mg/ml of pepstatin A, leupeptin, and aprotinin. Total protein was measured using the BCA assay (Pierce Scientific, Waltham, Massachusetts). Western blotting was carried out as previously described (Umbaugh, Nguyen et al. 2021c (link)). Primary antibodies (1:1000) used were JNK (#9252), P-JNK (#4668), PCNA (sc-56), Cyp2f2 (sc-374540), Cyp2e1 (ab28146), Bax (#2772), AIF (#5318), Smac/DIABLO (5318), beta-actin (#4970, Cell Signaling Technology, Danvers, MA). HRP-coupled anti-rabbit or anti-mouse IgG secondary (1:5000) with chemiluminescence was used for visualization (Amersham Biosciences Inc., Piscataway, New Jersey) and densitometric analysis was completed using Image Studio Lite (Ver 5.2). Densitometry normalization was done by taking the measured band intensity of the protein of interest and dividing it by the respective loading control or as a ratio of the cytosolic to mitochondrial protein.
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