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15 protocols using phrodo e coli bioparticles

1

Phagocytic and Endocytic Capacity of Cell Lines

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The phagocytic and endocytic properties of the established cell line were evaluated using 2% pHrodo™ E. coli Bioparticles® (Life Technologies, Carlsbad, CA). Using a 24-well plate, 100,000 cells were plated per well and left overnight. Culture medium was removed and replaced by 2% pHrodo™ E. coli Bioparticles® diluted in Live Cell Imaging Solution (Life Technologies, Carlsbad, CA) for 1.5–2 h before imaging. Confocal images were obtained using Leica TCS SPE confocal system (Leica Microsystems, Buffalo Grove, IL) on excitation wavelength of 460 nm. Commercially available murine macrophage cell line J774.A (ATCC® TIB-67™), a canine HS cell line DH82, derived from a macrophage derived sarcoma, hemophagocytic HS (ATCC® CRL-10389™), and canine fibroblasts isolated from the tunica albuginea were used for functional comparison purposes.
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2

Phagocytosis Assay with Microglial Cells

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Microglial cells were incubated with the pH-dependent pHrodo E. coli BioParticles (Thermo Scientific) for 1 h. After washing with PBS, cells were subjected to flow cytometry to measure the fluorescence intensity. Cells that were not incubated with microspheres served as negative controls and were used for background subtraction. Alternatively, after incubating with and removing unbound BioParticles, microglial cells were fixed in 4% paraformaldehyde, and stained with DAPI. The fluorescent signals were captured under a fluorescent microscope (Olympus) and analyzed using ImageJ.
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3

Phagocytosis Assay for Microglia

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Primary microglia and HMC3 cells were plated into 12-well plates as described above. After 24 h, all cells were treated with myelin debris at 10 μg/mL. PHrodo E. coli bioparticles (P35366, Thermo Fisher, USA) were added to the cells for 2 h to evaluate the phagocytic ability. As negative controls, pre-treatment of Cytochalasin D was carried out for 30 min to prevent phagocytic uptake of cells. For fluorescence staining, cells were washed with PBS to remove non-phagocytosed pHrodo bioparticles followed by fixation with 4% PFA for 30 min. After blocked by 5% goat serum, cells were incubated with primary antibody rabbit anti-Iba1 (1:500, Wako, Japan) overnight at 4 °C. Cells were incubated with 594-labeled secondary antibodies (Invitrogen, USA) for 2 h and then mounted by Fluoromount-G with DAPI for 10 min. For flow cytometry assay, cells were trypsinized and centrifuged at 1000 rpm for 5 min. After that, cells were resuspended in FACS buffer to analyze the fluorescent intensity of FITC on a FACSVerse Flow Cytometer (BD Biosciences, USA).
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4

Phagocytosis Assay of Sorted MDSCs

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Sorted MDSCs were exposed to pHrodo E. coli BioParticles (ThermoFisher P35366) at 100 μg/1×105 cells in live cell imaging solution (ThermoFisher #A14291DJ) for 90 minutes. Conjugated cell surface antibodies were added as indicated for 30 minutes, cells were extensively washed, and cells were analyzed by flow cytometry.
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5

Phagocytosis of E. coli by THP-1 cells

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Differentiated Human THP-1 cells were incubated at 37 °C with pHrodo E. coli bioparticles (ThermoFisher Scientific, P35361) for 60 min as per the manufacturer’s instructions, followed by fixing the cell using 4% paraformaldehyde (PFA) and actin was stained using AlexaFlour-488 phalloidin. Wherever indicated, cytochalasin (CytoD) or SecinH3 were added to the THP-1 cells 30 min prior to incubating the cells with pHrodo E. coli bioparticles. The amount of phagocytosis was assessed by counting the internalized bacteria (red) in a minimum of 50 cells per condition.
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6

Remote Injury Effects on Pneumonia

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To determine whether a remote inflammatory event modulates susceptibility to pneumonia, mice were subjected to MI, stroke or CLP. Pneumonia was induced on day 4 after the first injury. Mice were subjected to bioluminescence/X-ray imaging on the following days. In some cases, alveolar macrophages were depleted before pneumonia induction. To this end, 25 μl clodronate liposomes were placed directly in the trachea (ClodronateLiposomes.org, Haarlem). Depletion efficacy was confirmed by flow cytometry. Tissue inflammation was assessed by FMT/CT as described above. IFNɣ protein levels were measured in lung supernatant on day 1 after MI using a commercially available ELISA kit (Mouse IFNɣ Quantikine ELISA kit, R&D Systems, cat: MIF00). Recombinant IFNɣ was obtained from PeProtech (cat: 315–05). IFNɣ was given directly into the trachea (10ng or 10μg per mouse).
Phagocytic activity of alveolar macrophages was assessed by means of pHrodo E.coli bio-particles (ThermoFisher Scientific, cat: P35366) on day 4 after MI. In brief, mice were anesthetized with 2% isoflurane and tracheally intubated with a 22G plastic catheter in an upright position. 10 μg (dissolved in PBS) were directly given into the trachea and uptake was measured via flow cytometry 2h later.
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7

Phagocytosis of E. coli Bioparticles

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3×106 cells were assessed for phagocytosis of pHrodo E. coli bioparticles (Molecular Probes, Life Technologies) according to the manufacturer’s guidelines and analysed by flow cytometry.
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8

Phagocytosis Assay of Neutrophils

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Neutrophils at the D7 PMN stage were pretreated with 20 nM RIST4721 (or DMSO) by adding drug to the culture media and incubating the cells for 30 min at 37 °C, 5% CO2. Next, 1 × 106 cells per sample were harvested by centrifugation at 250× g for 5 min, washed in PBS and resuspended in HBSS at 100 μL per sample. The drug and DMSO were added to the cell mixtures at the same concentration as used for the pretreatment step. The cells were then subjected to a phagocytosis assay as described previously [41 (link)]. Briefly, the cell/drug mixtures were transferred into 5 mL snap-cap tubes together with 710 μL of HBSS, 100 μL of mouse serum, 80 μL of NucBlue reagent and 10 μL of opsonized pHrodo E. coli bioparticles (Molecular Probes, Eugene, OR, USA). The tubes were secured with parafilm and incubated at 37 °C with gentle rocking for 1 h. The samples were then harvested through centrifugation at 1000× g for 5 min and resuspended in 35 μL HBSS with 2% FBS for processing with FlowSight imaging flow cytometer (Luminex).
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9

Phagocytic Activity Measurement in Blood

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Phagocytic activity was measured on days 0, 15 and 30 using a commercial kit
(pHrodo E. coli BioParticles, Molecular Probes
Inc., Oregon, USA). Blood samples were collected by jugular puncture and placed
in heparinized tubes. Then, 100 μL of each sample was incubated with 20 μL of
pHrodo E. coli BioParticles, a reagent
provided by the commercial kit. For each blood sample two tubes were prepared
with the bioparticles; one was placed on ice, and the other kept in a water bath
at 37 ºC for 15 min. Next, the incubated samples were lysed, followed by
centrifugation and washing using the proper reagents as recommended by the
manufacturer. Two negative control samples were run together on each collection
day, both tubes with no bioparticles, but one placed on ice and the other kept
at 37 ºC. Samples were analyzed using a flow cytometer (FACSCanto, Becton
Dickinson Immunocytometry System, Mountain View, CA, USA), and the results were
expressed as the percentage of fluorescence signal inside the desired population
of neutrophils and monocytes. The target cell population was gated according to
its volume and complexity [36 (link)].
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10

Phagocytic Activity Assay Using pHrodo E. coli BioParticles

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Phagocytic activity was measured on days 1 and 28 using a commercial kit (pHrodo E. coli BioParticles, Molecular Probes Inc., Oregon, USA). The protocol consisted of incubation of 100 μL of a heparinized blood sample with 20 μL of pHrodo E. coli BioParticles reagent provided by the commercial kit (bioparticle:phagocyte ratio of 20:1). For each blood sample, two tubes were prepared with the bioparticles, with one tube placed on ice and the other kept at 37 °C in a water bath for 15 min. Then, the incubated samples were lysed, followed by centrifugation and washing using the proper reagents. Two negative control samples were analysed together on each collection day, both tubes with no bioparticles but one placed on ice and the other kept at 37 °C. Samples were analysed using flow cytometry (FACSCanto®, Becton Dickinson Immunocytometry System, Mountain View, CA, USA), and the results are shown as the percentage of fluorescence signal inside the desired population of phagocytosing neutrophils and monocytes.
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