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22 protocols using triplus rsh

1

Automated Headspace SPME of Volatiles

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Automated HS-SPME was performed with a TriPlus RSH autosampler (Thermo Fisher Scientific, Bremerhaven, Germany). The extraction conditions were established according to a published method developed by Clarke et al. (2019) (link). A powder sample (2.4 g) was mixed with 10 μL of 1.0018 mg/L 4-methyl-2-pentanol (internal standard) and 2.5 mL dH2O in a 25 mL vial. The vial was capped with a PTFE-silicon septum and equilibrated at 43 °C for 10 min under agitation. Then, a DVB/CAR/PDMS fiber was inserted into the headspace of the vial to adsorb volatiles at 43 °C for 45 min. Afterwards, the fiber was immediately inserted into the GC injection port at 260 °C for 8 min to desorb the volatiles.
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2

Compound-Specific Stable Isotope Analysis

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Carbon isotope ratios were determined via compound-specific stable isotope analyses using GC-isotope ratio mass spectrometry (IRMS). The organic mixture was separated by gas chromatography and baseline-separated compounds were chemically converted into the analyte gas CO2 for 13C/12C analysis (Elsner et al., 2012 (link)). Carbon isotope fractionation was determined in triplicate by injection into the gas chromatograph (Agilent 6890, Palo Alto, CA, United States) using a CP-PoraBOND column (50 m × 0.32 mm, 5 μm inner diameter, J&W Scientific, Germany). One mL of the reaction mixture was transferred to a He-flushed 10 mL glass vial wherefrom 1 mL headspace sample was injected via autosampler (TriPlus RSH, Thermo Scientific, Germany) with a split ratio of 1:5. For chromatographic separation a temperature gradient program was used, starting from 30°C (held for 10 min) followed by a 20°C ⋅ min–1 gradient to 250°C (held for 5 min) with 2 mL ⋅ min–1 flow and an injector temperature of 280°C (Franke et al., 2017 ). Carbon isotope ratios were determined at the IRMS (MAT 235, Thermo Scientific, Germany) relative to the laboratory reference gas [CO2, calibrated against Vienna Pee Dee Belemnite standard V-PDB, IAEA Vienna, Austria (Coplen et al., 2006 (link))]. The overall analytical uncertainty was <0.5%.
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3

Determination of Glucosinolate Hydrolysis Products

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Freeze–dried kale powder (50 mg) was suspended in 1 mL distilled water in a 2 mL microcentrifuge tube (Fisher Scientific, Waltham, MA, USA). Hydrolysis products were generated naturally by endogenous myrosinase in the absence of light at room temperature for 24 h. After adding 1 mL of dichloromethane, the samples were centrifuged at 12,000× g for 2 min, and the lower organic layer was collected. A gas chromatograph (Trace 1310 GC, Thermo Fisher Scientific, Waltham, MA, USA) coupled to an MS detector system (ISQ QD, Thermo Fisher Scientific, Waltham, MA, USA) and an autosampler (Triplus RSH, Thermo Fisher Scientific, Waltham, MA, USA). A capillary column (DB-5MS, Agilent Technologies, Santa Clara, CA, USA; 30 m × 0.25 mm × 0.25 µm capillary column) was used to determine GS hydrolysis products. A 1 μL sample of the dichloromethane extract was injected into the GC–MS with a split ratio of 1:1. After an initial temperature held at 40°C for 2 min, the oven temperature was increased to 260°C at 10°C/min and held for 10 min [42 (link),82 (link)]. The injector and detector temperatures were set to 200°C and 280°C, respectively. The flow rate of the helium carrier gas was set to 1.1 mL/min. The peaks were identified using information from a previous publication [42 (link)] or by comparison with data in the National Institute of Standards and Technology (NIST) library.
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4

Quantitative Extraction of Short-Chain Fatty Acids from Human Milk

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Sample preparation was adapted from protocol of Zheng et al. (15 (link)). Extraction steps were carried out at 4°C. Briefly, 1 ml of human milk were used and suspended with 500 µl solution of NaOH at 0.005 M including internal standard mix of acetate-D3, butyrate-13C2, propionate-D2 and valerate-D9 at 235 µM, 88 µM, 82 µM and 41 µM, respectively. 500 µl of propanol/pyridine mix (3:2 v/v) were added to the samples and then vortexed. 50 µl of propylchloroformate (PCF) was successively added twice to the solution and vortexed. The biphasic solution was formed after addition of 300 µl of hexane and sonicated and centrifuged at 2000xg and 4°C during 5 min. 300 µl of organic phase were transferred to GC/MS vials before their injections. SCFAs were quantified by GC/MSusing an ISQ LT™ equipped with a Triplus RSH (Thermo Fisher Scientific, Illkirch, France) and a fused-silica capillary column with a (5%-phenyl)-methylpolysiloxane phase (DB-5ms, J&W Scientific, Agilent Technologies Inc., USA) of 50 m×0.25 mm i.d coated with 0.25 µm film thickness. Peaks of SCFAs were quantified using XCalibur QuanBrowser software (Thermo Fisher Scientific, Illkirch, France). Details on chromatography, calibration range, limit of detection and retention time of SCFAs are reported in supplementary materials (Supplementatary Table S1).
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5

Quantitative Determination of Persistent Organic Pollutants

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A total of 5 g of lyophilised sample was weighed in a 60 mL glass vial, spiked with a mix of deuterated PAH (Mix 25) and a PCB105_C13 to a final concentration of 1 ng/g and held in freeze overnight. Then, lipids and contaminant compounds were extracted following four main steps:

lipids extraction following the Bligh and Dyer method [45 ];

lipids hydrolyzation with alkaline solution 6M (KOH in water) at 80 °C in an oven overnight, and recover the not-hydrolysable contaminants (PAH, PCB, PBDE) by liquid–liquid extraction using dichloromethane (DCM);

samples cleaning up using a Florisil SPE (solid phase extract from Supelco) of 1 g/6 mL;

solvent evaporation using a multi-vapour (from Buchi coupled with a Buchi Rotavapor) until dry and, in the end, 1 mL of hexane, containing PAH mix deuterated and PCB105C13, both used as internal standard, was added in the test tube. The mixture after stirring was poured into the vials to the instrument analysis.

A total of 16 PAHs, 21 PCBs, and 8 PBDE were quantified, in two different steps (one for PAH and a second for PCBs and PBDEs), using a gas chromatograph coupled with a triple quadrupole mass spectrometer GC-MS/MS with autosampler (GC Trace 1310, MS TSQ8000, and Triplus RSH with a syringe of 10 μL from Thermo Scientific), injecting 5 μL of sample in a large volume injector (LVI), and using a TG-5MS as capillary column [46 (link),47 (link)].
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6

Dissolved Inorganic Carbon and Methane Analysis

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DIC water samples were analyzed using a DIC analyzer (Apollo SciTech, model AS-C5). The instrument was calibrated using repeated measurements of certified reference material from the Scripps Institution of Oceanography (CRM batch number 191). One LM vial for DIC measurement broke during the transportation and is therefore missing in the data. CH4 water and sediment pore-water samples were quantified by headspace analysis using a gas chromatograph (GC Trace 1300, Thermo) equipped with an autosampler (TriPlus RSH, Thermo), a non-polar PLOT column (TracePLOT TG-BOND Q, Thermo), and a flame ionization detector. Certified standards of 1.86and 49.82 ppm CH4 (Air Liquide Gas) were injected and used for calibration. The ppm concentrations were converted into molar concentrations, adjusting for sediment porosity, using the ideal gas law. Sediment porosity was determined by weighing wet and dry sediment (48 h at 70°C). This was followed by LOI analysis by measuring the weigh difference before and after igniting the dry sediment at 550°C for 5 h.
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7

Determination of VOCs in Calypogeia azurea

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The following solvents were used during the research: n-hexane, puriss. p.a., ≥99% (GC), ethyl acetate, puriss. p.a., 99.9% (GC), methanol for GC, Sigma-Aldrich (Steinheim, Germany) and m-xylene, diethyl ether, puriss. ≥99.9% (GC), methylene chloride >99.9%, POCH (Gliwice, Poland). Saturated n-alkanes of C7-C40 standard Supelco (Bellefonte, PA, USA) were used to determine the Kovats retention indices.
Fused silica fibers coated with divinylbenzene/carboxy/polydimethylsiloxane (DVB/CAR/PDMS) (Supelco, Bellefonte, PA, USA) stationary phases were used for the SPME analysis.
Trace 1310 (Thermo Scientific, Waltham, MA, USA) coupled with a mass spectrometer ISQ QD (Thermo Scientific, Waltham, MA, USA) with a 007-5MS column (30 m, 0.25 mm, 0.25 μm) (Quadrex, Woodbridge, CT, USA) were used to analyze the VOC compounds present in the cells of the Calypogeia azurea species.
The TriPlus RSH (Thermo Scientific, Waltham, MA, USA) automatic sample injector was used to ensure that the samples were dispensed with sufficient reproducibility.
HD was carried out using a Deryng apparatus consisting of a 500 mL round-bottom flask, a condenser, and a heating bowl (Lab-szkło, Kraków, Poland), recommended by the VI edition of the Polish Pharmacopoeia of 2002. The Ethos one (Milestone, Sorisole, Italy) was used for MAE.
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8

GC-MS Analysis of Seed Extracts

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Each seed extract sample was diluted by adding DCM (1:10), and their fraction components were analyzed by GC-MS (TRIPLE QUAD GC-MS/MS) (Thermo Fisher, USA), equipped with an autosampler (TriPlusRSH) and DB 5 column (40 m × 0.15 mm i.d., film thickness of 0.15 μm). For analysis of two different seed extracts, the following GC-MS operating conditions were followed with slightly modification as described by Al-Owaisi et al. [19 (link)]: initial temperature was kept at 80°C and time held for a min, thereafter with 10°C/min ramping rate reached up to 180°C by holding 2 min, and finally with same ramping increased to 260°C and was held for 15 minutes. Transfer line temperature, 250°C; carrier gas, He at constant flow rate 0.7 mL/min; split ratio, 71 : 4; 1 μL of injection volume; component ionization, electron impact (70 eV) mode; EI source temperature, 230°C; m/z range, 45-450. The respected component relative concentrations were expressed as percent area on basis evolved in chromatograph. The identity of their components was done on the basis of visual interpretation and compared based on probability and literature search input as per NIST library (v. 2.2, 2014) with different types of compounds identified.
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9

Meat Volatile Compound Extraction and Analysis

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Five grams meat samples were (Delonghi, Mod. CG660, Treviso, Italy) at 130–150 °C until 70 °C at core was reached. Temperature was measured with a copper constantin fine-wire thermocouple fixed in the geometrical center of the sample (Model 5SCTT-T-30-36; Omega Engineering Inc., Norwalk, CT, USA) as described by Maggiolino et al. [32 (link)]. Then, samples were minced using a commercial grinder (Moulinex/Swan Holding Ltd., Birmingham, UK), and analyzed. The volatile compounds were extracted by solid-phase micro-extraction (SPME) as described by Natrella et al. [33 (link)]. The samples were weighed (1 ± 0.05 g) into 20 mL vials, closed by a rubber septum and an aluminum cap. All samples were added with internal standard (82 ng 2-octanol) to perform a semi-quantitation and loaded into an autosampler Triplus RSH (Thermo Fisher Scientific, Rodano, Italy).
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10

GC-MS Analysis of Target Compound

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Thermo Trace 1300 (Thermo Fisher Scientific, Bremen, Germany) equipped with an ISQ Single MS spectrometer (Thermo Fisher Scientific, Austin, TX, USA) was used to analyze the target compound. The samples were injected using a Triplus RSH automatic injector (Thermo Fisher Scientific, Austin, TX, USA). The SPME fiber was placed at the GC injection port and desorbed at 250 °C for 4 min in a splitless mode. Helium (purity > 99.999%) was used as the carrier gas at a flow rate of 1 mL/min. The compounds were separated on an HP-5MS capillary column (30 m × 0.25 mm × 0.25 μm, Agilent Technologies, Inc., Santa Clara, CA, USA). The temperature program was 40 °C for 1 min and was increased to 200 °C at 4 °C/min, followed by an increase at 20 °C/min to 250 °C, which was maintained for 10 min. The temperature of the transfer line and ion source was 250 °C, and the temperature of the quadrupole was 150 °C. The MS operated in electron ionization mode at 70 eV. The mass scan range was 50–400 amu.
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