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53 protocols using visiview

1

Measuring Intracellular Calcium in TALs

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Perfused TALs were stabilized on the bath bottom with a holding pipette. The perfusion chamber was mounted on an inverted fluorescence microscope (Axiovert 100 TV, Zeiss, Germany). The setup comprises an inverted microscope with a 63x C-Apochromat 1.2NA water objective and a digital CCD camera (Spot Pursuit 1.4 monochrome, Diagnostic Instruments, Sterling Heights, USA). Images were acquired and data analyzed with standard software (VisiView, Visitron, Puchheim, Germany). Intracellular Ca2+ concentration ([Ca2+]i) was measured with the single wavelength fluorescent dye fluo-4 AM (Invitrogen, USA). Tubules were incubated with 5 μM basolateral fluo-4-AM in control solution for 30 min at room temperature during continuous luminal perfusion, followed by a 10 min basolateral washout period at 37°C. Fluo-4 fluorescence was measured every 3 s using 480 nm excitation for 300 ms. A 500 nm beam split and a 520–560 nm band pass filter were used to collect the emitted light using binning factor 3. Experimental manipulations were carried out after a stable fluorescence signal was achieved. Fluorescence of the entire tubule was recorded and used for data analysis after background light subtraction. ATP-induced changes of [Ca2+]i were expressed normalized as F/F0.
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2

Microscopy of Dsc Complex in Yeast

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For microscopy, cells were grown to midlog (OD600=0.5 -0.8) phase in YNB media, concentrated by centrifugation and directly mounted onto glass slides. For imaging of the Dsc complex (Fig. S4B), cells were grown for 36 hours on selective YNB agar plates, dissolved in sterile water and mounted for imaging. Live cell wide field fluorescence microscopy was carried out using a Zeiss Axio Imager M1 equipped with a sola light engine LED light source (Lumencore), a 100x oil immersion objective (NA 1.45,) standard GFP and mCherry fluorescent filters, a SPOT Xplorer CCD camera, and Visitron VisiView software (version 2.1.4). The brightness and contrast of the images in the figures were adjusted using Photoshop CS5 (Adobe Version 12.0.4x64; RRID:SCR_014199). For merged images the levels of red and green channels were separately adjusted.
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3

Quantifying Intracellular Salmonella in Cecum Tissue

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Cecum tissue was fixed in 4% paraformaldehyde/4% sucrose, saturated in PBS/20% sucrose, embedded in optimum cutting temperature medium (Tissue-Tek), flash-frozen in liquid nitrogen, and stored at −80°C; 20 μm cryosections were air-dried, rehydrated with PBS, permeabilized (PBS/0.5% Triton X-100), and blocked (PBS/10% Normal Goat Serum). Antibody stainings included anti-ICAM-1/CD54 (clone 3E2, Becton Dickinson), anti-CD18 (clone M18-2, Biolegend), appropriate secondary reagents, AlexaFluor647-conjugated phalloidin (Molecular Probes), and DAPI (Sigma Aldrich). Samples were mounted with Mowiol (Calbiochem). A Zeiss Axiovert 200 m microscope with 10×–100× objectives, a spinning disc confocal laser unit (Visitron), and two Evolve 512 EMCCD cameras (Photometrics) were used for imaging. Postcapture processing and analysis used the Visiview (Visitron) and Image J ×64. For quantification of S.Tm in the epithelium, 20 μm cross-sections were stained for ICAM-1, phalloidin, and DAPI and intracellular S.Tm-GFP+ were manually enumerated blindly in six to nine nonconsecutive sections/mouse. All data represent averages/section.
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4

Exponential Decay Analysis of Iso-cell Ca2+ Dynamics

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All values are given as mean ± SEM or SD. Data were analyzed using VisiView (Visitron), Microsoft Excel (Microsoft), Igor Pro (Wavemetrics), Image Lab™ (Bio-Rad) and GraphPad (GraphPad Software Inc.). Rate constants (k values) of iso-cells were calculated for each trace by exponential decay analysis after removal of external Ca2+. Significances of data were calculated with an unpaired two-sided Student’s t-test if Gaussian distribution was given. If no Gaussian distribution was given, data were analyzed with the nonparametric Mann-Whitney test. For multi-parameter analysis data were analyzed with ANOVA. Degrees of significance were set at * p < 0.05, ** p < 0.01, *** p < 0.001 and **** p < 0.0001.
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5

Offline Video Analysis of Vascular Interactions

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In offline video analysis video analysis, the software VisiView (Version 3, Visitron Systems GmbH, Puchheim, Germany) was used. Platelets and leukocytes were quantified by respective characteristics and in accordance to rheological properties classified as (a) free flowing (no intercellular or endothelial contact), (b) rolling (slower than centerline blood flow) and (c) adherent (sticking to endothelium for more than 30 s) [46 (link)]. Rolling velocity was expressed as number of rolling cells per second per millimeter of vessel diameter (cells/s/mm), whereas adhesion was presented as number of sticking cells per square millimeter of vessel surface calculated by diameter and length (cells/mm2). Interactions between platelets and leukocytes, platelets and endothelial cells, leukocytes and endothelial cells as well as all three types of cells were documented independently.
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6

Intracellular pH Measurement in PANC-1 Cells

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The intracellular pH of PANC-1 cells was measured using fluorescent live-cell imaging (Axiovert TV100, Zeiss, Oberkochen, Germany) as described previously [45 (link)]. Cells were loaded with the fluorescent pH indicator 2′7′-bis(carboxyethyl)-5-carboxyfluorescein (BCECF-AM) (3 µM) for up to 2 min. The excitation wavelength alternated between 490 nm and 440 nm. The emitted fluorescence was detected at 510 nm. The mean fluorescence of each cell was measured in 10 s intervals. Data acquisition and the polychromator (Visitron Systems, Puchheim, Germany) were controlled by the program VisiView (Visitron Systems). The cells were superfused with prewarmed (37 °C) CO2/HCO3-buffered Ringer’s solution (116 mM NaCl; 24 mM NaHCO3; 5.4 mM KCl; 0.8 mM MgCl2; 1.2 mM CaCl2; 5.5 mM Glucose) at pH 7.4. NaHCO3 was lowered to 4.7 mM for pH 6.6. pH measurements were calibrated with a two-point calibration (130 mM KCl; 1.2 mM CaCl2; 0.8 mM MgCl2; 10 mM Hepes; 5.5 mM Glucose; pH 7.5 and pH 6.5; supplemented with 10 µM Nigericin) (Sigma-Aldrich, Merck KGaA, Darmstadt, Germany). For data analysis, the mean fluorescence intensity of the cell area was measured and corrected for background fluorescence. Afterward, the 490 nm/440 nm ratio was determined, and the pHi was calculated with a linear regression of pH 6.5 and 7.5.
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7

Microscopy of Cells on Agar Cushions

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Cells were placed onto 2% (w v−1) agar cushions and observed using an IX83 motorized inverted microscope (Olympus, Hamburg, Germany), equipped with a PlanApo × 100/1.45 oil TIRF objective (Olympus) and a VS-LMS4 Laser-Merge-System with solid-state lasers (488 nm/ 70 mW and 561 nm/ 70 mW, Visitron System, Puchheim, Germany). For photo-bleaching experiments, a 405 nm/ 60 mW diode laser was used, which was coupled into the light path by an OSI-IX 71 adaptor (Visitron System) and controlled by a UGA-40 controller (Rapp OptoElectronic, Hamburg, Germany) and VisiFRAP 2D FRAP control software. Z stacks were generated by using an objective piezo (Piezosystem Jena GmbH, Jena, Germany). Images were acquired using a Photometrics CoolSNAP HQ2 camera (Photometrics/ Roper Scientific, Tucson, USA). All parts of the system were under the control of the software package VisiView (Visitron System). Samples were observed for no longer than 10 min, to prevent oxygen depletion. All image processing was performed in MetaMorph 7.8.x (Molecular Devices, Wokingham, UK).
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8

E-cadherin-Mediated Cell Imaging

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Gridded-glass-bottom dishes (Mattek) were coated with 2 ug/ml recombinant mouse E-cadherin (R&D Systems, 748-EC) in PBS at 4°C overnight. 5x105 cells were seeded in full medium one day before imaging supplemented with 4-OHT and Dox as indicated above. Cells were imaged with a Nikon Eclipse Ti-E inverted widefield microscope (Perfect Focus System with real time drift correction for live cell imaging) operating in TIRF mode using a CFI APO TIRF 100x/1.49 oil objective (Nikon). A 488nm, 200mW Toptica iBEAM SMART laser was used as excitation source. Cells were maintained at a constant temperature of 37°C and 8% CO2 within an incubation box. Images were collected with an Evolve™ 512 Delta EMCCD high speed Camerang using Visiview (Visitron). Background subtraction (150-pixel rolling ball radius) and maximum intensity projections were performed in ImageJ.
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9

E-cadherin-Mediated Cell Imaging

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Gridded-glass-bottom dishes (Mattek) were coated with 2 ug/ml recombinant mouse E-cadherin (R&D Systems, 748-EC) in PBS at 4°C overnight. 5x105 cells were seeded in full medium one day before imaging supplemented with 4-OHT and Dox as indicated above. Cells were imaged with a Nikon Eclipse Ti-E inverted widefield microscope (Perfect Focus System with real time drift correction for live cell imaging) operating in TIRF mode using a CFI APO TIRF 100x/1.49 oil objective (Nikon). A 488nm, 200mW Toptica iBEAM SMART laser was used as excitation source. Cells were maintained at a constant temperature of 37°C and 8% CO2 within an incubation box. Images were collected with an Evolve™ 512 Delta EMCCD high speed Camerang using Visiview (Visitron). Background subtraction (150-pixel rolling ball radius) and maximum intensity projections were performed in ImageJ.
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10

Intracellular Ca2+ Imaging in Neuronal Cultures

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Intracellular Ca2+ imaging experiments were performed in mouse cortical neurons (DIV 10) as well as in smNPC‐derived neuronal cultures grown on glass coverslips. Cells were loaded with 2 μM of the nonratiometric dye Fluo‐4 AM (Molecular Probes) for 45 min at 37°C in artificial cerebral‐spinal solution (CSS‐5: 120 mM of NaCl, 5 mM of KCl, 1.8 mM of CaCl2, 15 mM of glucose, 25 mM of HEPES pH 7.4, supplemented with 10 μM of glycine). Afterward, cells were incubated for an additional 15 min in CSS‐5 without Fluo‐4 AM at 37°C before being imaged. Live cell imaging was performed with a Zeiss epifluorescence microscope using a 40× oil‐immersion objective with images being taken every 2 s. Following 3 min of baseline measurements (F0), cells were stimulated with 50 or 100 μM of glutamate (F). Fluorescence intensities were then quantified in individual cells using the software VisiView® (Visitron Systems). Data are represented as ΔF (F–F0) normalized to baseline measurements (F0).
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