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Complete and phosphostop

Manufactured by Roche
Sourced in Switzerland, United States

Complete and Phosphostop are laboratory reagents used in protein extraction and analysis. Complete is a protease inhibitor cocktail that helps preserve the integrity of proteins by preventing their degradation. Phosphostop is a phosphatase inhibitor that maintains the phosphorylation state of proteins, which is crucial for understanding cellular signaling pathways. These products are designed to be used in various protein-based techniques, such as Western blotting, immunoprecipitation, and enzymatic assays.

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9 protocols using complete and phosphostop

1

Protein Extraction and Western Blot Analysis

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Cells were harvested by scraping, washed in ice-cold PBS, and lysed in 150 μL/10 cm2 lysis buffer (50 mM Tris-HCl pH 7.6, 250 mM NaCl, 0.1% Triton X-100, and 5 mM EDTA) supplemented with protease and phosphatase inhibitors (complete and PhosphoSTOP, Roche, Basel, Switzerland). Samples were sonified (Diagenode, Liège, Belgium) and cleared by centrifugation (15 min, 4 °C, 14000 × g). Relative protein content of supernatants was assessed using Pierce BCA Protein Assay Kit (Thermo Fisher Scientific). Equal amounts of protein (typically 30 μg) were separated by SDS-PAGE and blotted (Biometra FastblotTM, Analytic Jena, Jena, Germany) onto nitrocellulose membrane (0.1 μm; GE Healthcare, Munich, Germany) by semi-dry blotting (1 mA/cm2, 1 h). Primary antibody was applied in PBST (0.1% Tween-20) overnight at 4 °C. Membranes were washed thrice 10 min incubated with horseradish-coupled secondary antibody (1:2000) for 2 h at room temperature. After washing, ECL solution was applied (SuperSignal™ West Dura, Thermo Fisher Scientific) and specific bands were detected using a Stella gel documentation system (Raytest Isotopenmessgeräte GmbH, Straubenhardt, Germany).
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2

Protein Extraction and Western Blot Analysis

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Tissues were homogenized, whereas cells were directly lysed using RIPA-DOC buffer supplemented with protease and phosphatase inhibitors (Complete and Phosphostop, Roche). A sonication step was performed prior to centrifugation at 10,200g for 10 min at 4°C. The supernatant was removed and the protein concentration determined (BioRad protein assay). SDS sample buffer containing beta mercaptoethanol was added and 20 μg protein was loaded per lane and resolved by 4–20% Mini-PROTEAN TGX precast gels (Biorad). Western blots were quantified by densitometry using the ImageJ software. The antibodies used for this study are described in Supplementary Table 3.
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3

Postmortem Brain Tissue Homogenization

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Postmortem human brain tissue was procured from the Rush University Medical Center, University of Maryland, Duke University, Brigham and Women’s Hospital, and Massachusetts General Hospital in accordance with institutional guidelines governed by approved protocols. Frozen specimens used in this study were from the prefrontal cortical gray matter (Brodmann areas 9 and 10) and were snap-frozen and stored at −140°C. Samples included tissue from young adults without neurological abnormalities and aged subjects without a diagnosis of Alzheimer’s disease or other neurodegenerative disease and neuropathological results within the normal range for age. Tissues were homogenized using dounce homogenizer, and cells were lysed at 4°C using RIPA-DOC buffer supplemented with protease and phosphatase inhibitors (Complete and Phosphostop, Roche). Sonication was performed prior to centrifugation at 10,000 rpm for 10 min at 4°C. The supernatant was removed and the protein concentration determined (BioRad protein assay). SDS sample buffer containing β-mercaptoethanol was added and 20 μg of protein was loaded per lane.
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4

Oxidative Stress and Antioxidant Evaluation in Brain

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For the determination of oxidative stress parameters and antioxidant components in the brain, frozen tissues were homogenized in RIPA buffer (Thermo Fisher Scientific, Waltham, MA, USA) supplemented with Complete and Phospho STOP (Roche, Basel, Switzerland) protease and phosphatase inhibitors as described [20 (link)]. Lipid peroxidation was determined using a commercial TBARS assay kit (CA995, Canvax, Cordoba, Spain). The final malondialdehyde products were detected by fluorescence spectroscopy with excitation/emission at 530 nm/590 nm in a microplate reader (POLARstar Omega, BMG Labtech, Ortenberg, Baden-Wuerttemberg, Germany). Levels of superoxide dismutase (SOD) activity were determined using an SOD assay kit (CA061, Canvax, Córdoba, Spain), according to the manufacturer’s protocol. Absorbance at 450 nm was measured using a POLARstar Omega plate reader. Catalase activities were determined using a commercial Catalase Activity assay kit (CA063, Canvax, Córdoba, Spain) following manufacturer’s instructions. Enzyme activity was detected by fluorescence spectroscopy with excitation/emission at 530 nm/590 nm in a microplate reader (POLARstar Omega).
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5

Protein Extraction and Western Blot Analysis

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Tissues were homogenized, whereas cells were directly lysed using RIPA-DOC buffer supplemented with protease and phosphatase inhibitors (Complete and Phosphostop, Roche). A sonication step was performed prior to centrifugation at 10,200g for 10 min at 4°C. The supernatant was removed and the protein concentration determined (BioRad protein assay). SDS sample buffer containing beta mercaptoethanol was added and 20 μg protein was loaded per lane and resolved by 4–20% Mini-PROTEAN TGX precast gels (Biorad). Western blots were quantified by densitometry using the ImageJ software. The antibodies used for this study are described in Supplementary Table 3.
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6

Quantifying Oxidative Stress and Antioxidants in Brain

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For the determination of oxidative stress parameters and antioxidant components in the brain, frozen tissues were homogenized in radioimmunoprecipitation assay (RIPA) buffer (Thermo Scientific, Waltham, MA, USA) supplemented with complete and phospho STOP (Roche, Basel, Switzerland) protease inhibitors. Lipid peroxidation was determined using a commercial TBARS assay kit (CA995, Canvax, Córdoba, Spain). The final malondialdehyde (MDA) products were detected by fluorescence spectroscopy, with excitation/emission at 530/590 nm in a microplate reader (POLARstar Omega). Levels of superoxide dismutase (SOD) activity were determined using an SOD assay kit (CA061, Canvax), according to the manufacturer’s protocols. Absorbance at 450 nm was measured using a POLARstar Omega plate reader. Catalase activities were determined using a commercial catalase activity assay kit (CA063, Canvax) following the manufacturer’s instructions. Enzyme activity was detected by fluorescence spectroscopy, with excitation/emission at 530/590 nm in a microplate reader (POLARstar Omega).
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7

Quantifying DNA Damage via Western Blot

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Cells were seeded 2 × 105 per well or 2 × 104 per well in 6-well plates. After 24 h recovery, cells were treated for 24 h or 7 days, respectively, with the indicated concentrations of the compounds. Cells were scratched into the medium and after washing with PBS, lysed in lysis buffer (50 mM Tris, 300 mM NaCl, 0.5% Triton-X-100) containing a phosphorylation inhibitor cocktail (Complete and Phospho-Stop, Roche, Austria) for 45 min on ice. After 5 min ultrasound bath, lysates were centrifuged for 15 min at 14 000 rpm at 4 °C. Protein concentration of supernatant was quantified using Micro BCA Protein Assay (Pierce, Thermo Fisher, Austria). 15 μg of proteins were separated by SDS-PAGE (10% gels), and transferred onto a polyvinylidene difluoride membrane for western blotting as described previously.51 (link) The following primary antibodies were used: anti-pH2AX monoclonal rabbit (Cell Signaling, #2577) and anti-β-actin monoclonal mouse (Sigma Aldrich, #A5441). Secondary, horseradish peroxidase-labeled antibodies were anti-rabbit monoclonal mouse (sc-2357, Santa Cruz Biotechnology, Austria) and anti-mouse polyclonal goat (Merck, #A0168) were used in working dilutions of 1 : 10 000.
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8

Native PAGE Protein Separation Protocol

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Cells were lysed in 20 μl of ice-cold lysis buffer A (50 mM Tris, pH 8.0, 100 mM NaCl, 0.5 mM TCEP, 2 mM MgCl2, supplemented with 1x Complete and PhosphoSTOP (Roche)). Lysis was performed by mechanical force using a pestle, pipetting and three cycles of freeze and thaw. After the addition of 20 µl lysis buffer B (lysis buffer A containing 40 mM CHAPS) and 1 μl Benzoase (Novagen), samples were incubated for 1 h on ice and subsequently centrifuged for 10 min at 4 °C and 13,000 r.p.m. to remove cell debris. 20 μl of supernatant was supplemented with 10 μl of 3x Native PAGE sample buffer (60% glycerol v/v, 15 mM Coomassie G250) and separated on BN-PAGE Novex 3–12% Bis-Tris protein gel system (Life Technologies) according to the manufacturer’s instructions. The cathode buffer was supplemented with 0.002% Coomassie G250, and the separation was performed at 4 °C for 60 min at 150 V, then 60 min at 250 V.
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9

Oxidative Stress Parameters in Brain

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For the determination of the oxidative stress parameters and antioxidant components in the brain, frozen tissues were homogenized (RIPA buffer, Thermo Scientific) supplemented with Complete and Phospho STOP (Roche, Basel, Switzerland) protease and phosphatase inhibitors), as described [18 (link)]. The activities of superoxide dismutase (SOD) and catalase were studied with commercially available kits (CA061 and CA063, respectively, Canvax, Córdoba, Spain). Lipid peroxidation was determined using a commercial TBARS assay kit (CA995, Canvax). The final products were detected with a microplate reader (POLARstar Omega, BMG Labtech, Ortenberg, Germany) at 530/590 nm (for catalase and TBARS) or 450 nm for SOD.
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