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D3 um

Manufactured by LGC
Sourced in Canada

[D3]Um is a versatile laboratory instrument designed for precise measurement and analysis. Its core function is to provide accurate data through scientific instrumentation, supporting a wide range of research and testing applications.

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3 protocols using d3 um

1

Quantitative Analysis of Nucleosides

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Acetonitrile of chromatographic grade was purchased from Merck KGaA (Darmstadt, Germany). A solution of formic acid (HCOOH) was purchased from Fluka (Muskegon, USA). Ammonium formate and malic acid were obtained from Sigma-Aldrich (St Louis, MO, United States). Adenosine, N6-methylAdenosine, N1-methylAdenosine, 2′-O-methylguanosine (Gm), N1-methylguanosine, N2-methylguanosine (m2G), 2′-O-methylcytidine, uridine, 3-methyluridine (m3U), 5-methyluridine (m5U), and 2′-O-methyluridine and isotopically labeled standards, including [13C5] A, [D3] m6A, [D3] m1A, [D3] Cm, [13CD3] m5C, [13C5N2] U, [D3] Um, [13C5] m5U, and [D6] m2,2G, were purchased from Toronto Research Chemicals (Toronto, Canada). In order to purify water, a Milli-Q water purification device was used (Millipore, Milford, MA, United States).
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2

Synthesis and Characterization of Methylated Nucleosides

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Chromatographic grade acetonitrile was bought from Merck KGaA (Darmstadt, Germany). Formic acid was obtained from Fluka (Muskegon, MI, USA) and water was obtained from a Milli-Q water purification apparatus (Millipore, Milford, MA, USA). Malic acid, ammonium formate and m5C were bought from Sigma-Aldrich (St Louis, MO, USA). Nine other methylated nucleosides, [D3]m6A, [D3]m1A, [D3]m6Am, [D3]Um, [13C5]m5U, [13C15N2]G and [13C5]C, were purchased from Toronto Research Chemicals (Toronto, Canada); [13C5]Am and [13C5]m5C were synthesized previously [3 (link),4 (link)].
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3

Quantification of RNA Modifications

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Chromatographic grade acetonitrile was bought from Merck KGaA (Darmstadt, Germany). Methanol of HPLC grade was purchased from J.T.Baker (Radnor, PA, United States). Formic acid (HCOOH) was bought from Fluka (Muskegon, United States). Ammonium formate, malic acid and 5-methylcytidine (m5C) were bought from Sigma-Aldrich (St Louis, MO, United States). 2′-O-methyladenosine (Am), N6-methyladenosine (m6A), 2′-O-methylguanosine (Gm), 1-methylguanosine (m1G), 2′-O-methylcytidine (Cm), 2′-O-methyluridine (Um), 5-methyluridine (m5U) and isotopically labeled standards [D3]m6A, [D3]Um and [13C5]m5U were obtained from Toronto Research Chemicals (Toronto, Canada). [13C15N2]Gm, [13C15N2]m1G and [13C5]Cm were synthesized according to literature (Fu et al., 2015 (link)). Water was purified by a Milli-Q water purification device (Millipore, Milford, MA, United States).
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