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15 protocols using ab128936

1

Histological Examination of Mouse Spleen and Bone

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Spleens obtained from mice were fixed in 4% paraformaldehyde in PBS (4% PFA/PBS). After blocking with paraffin, the fixed tissues were sliced into 2 μm sections and histologically examined following hematoxylin and eosin (HE) staining or immunohistochemical staining using anti-Syndecan-1 (CD138; Abcam, ab128936).
The femurs were fixed in 4% paraformaldehyde solution in 0.1 M PBS for 24 h at 4°C and then washed using PBS and decalcified in 10% EDTA for 4 weeks. Following a graded ethanol series dehydration, the samples were cleared in xylene, embedded in paraffin, and incised into thin sections (4um) in coronal. After been deparaffinized, the serial sections were stained with hematoxylin and eosin (H&E), TRAP or immunohistochemical staining of CD138 and RANKL (proteintech, 66610-1-Ig).
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2

Western Blot Analysis of Epithelial-Mesenchymal Transition Markers

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The protein extraction was carried out by RIPA lysis buffer (AQ521, Beijing AOqing Biotechology, China) containing ProtLytic Protease Inhibitor Cocktail (P001, New Cell & Molecular Biotech, Shanghai, China). The cell lysates were then resolved by NuPAGE™ (4–12%) Bis–Tris PAGE (NP0322BOX, ThermoFisher Scientific) and transferred onto PVDF membranes. After blocking, the membranes were incubated overnight with primary antibodies against SDC1 (ab128936, 1:1000; Abcam, Cambridge, UK), Smad2 (5339, 1:1000; CST, Danvers, MA, USA), Phospho-Smad2 (18338, 1:1000; CST), anti-smad3 (ab40854, 1:1000; Abcam), Phospho-Smad3 (9520, 1:1000; Abcam), E-Cadherin (3195, 1:1000; CST), N-Cadherin (13116, 1:1000; CST), Vimentin (5741, 1:1000; CST), TGF beta 1 (ab215715, 1:1000; Abcam) and HRP-conjugated GAPDH Monoclonal antibody (HRP-60004, 1:10000; ProteinTech) at 4 °C. Then the membranes were washed three times and incubated with HRP-conjugated Affinipure Goat Anti-Rabbit IgG (H + L) (SA00001-2, 1:10000; ProteinTech, Chicago, IL, USA) for 1 h at 24 °C. The NcmECL Ultra Kit (P10300, New Cell and Molecular Biotech) was added, the proteins were visualized by Amersham Imager 680 (Beijing LABAID Science and Technology. LTD, China) and were evaluated using ImageJ 1.8.0.
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3

Protein Expression Analysis in Lung Tissue

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The total protein in the lung tissue was extracted with cell lysis buffer and measured using a BCA protein assay kit, and the proteins were resolved using SDS–polyacrylamide gel electrophoresis. Electrophoresis of proteins was followed by transfer to PVDF membrane. The membrane was incubated with primary antibodies against Bax (ab32503, Abcam, China; 1 : 1000), Bcl-2 (ab32124, Abcam, China; 1 : 1000), cleaved caspase-3 (ab32042, Abcam, China; 1 : 1000), SDC-1 (ab128936, Abcam, China; 1 : 1000), claudin-5 (ab131259, Abcam, China; 1 : 1000), ZO-1 (ab190085, Abcam, China; 1 : 1000), and VE-cadherin (ab231227, Abcam, China; 1 : 1000) at 4°C overnight, followed by 1 hour at room temperature with the secondary antibody. The protein bands were identified using an enhanced detection chemiluminescence (ECL) technique.
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4

Immunofluorescence Imaging of SDC1, EWSR1, and FUS

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STAV-AB cells were seeded on cover slips in 24-well plates and fixed, after 24 h, in 4% PFA for 15 min at room temperature. Cells were permeabilized using 0.1% Triton in PBS (PBST) for 15 min. Blocking was performed for 1 h with 3% Bovine Serum Albumin (BSA) in PBST. Co-staining was then performed with a combination of antibodies against SDC1 (1:500, rabbit monoclonal anti-SDC1, ab128936, Abcam, Cambridge, UK) and either EWSR1 (1:200, rat monoclonal anti-EWSR1/EWS, ab252829, Abcam) or FUS (1:200, mouse monoclonal anti-TLS/FUS, ab154141, Abcam, Cambridge, UK) in 0.1% BSA in PBST. The following secondary antibodies were used: goat anti-rabbit 555 for SDC1, goat anti-rat 488 for EWSR1 and goat anti-mouse 488 for FUS detection (ThermoFisher, Stockholm, Sweden). Cells were mounted and imaged through a Zeiss LSM800 confocal microscope (Stockholm, Sweden). Images were imported into Image J.
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5

Immunofluorescence Analysis of Syndecan-1 and Heparan Sulfate in Endothelial Cells

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Lung tissue sections were deparaffinized with xylene and dehydrated with ethanol. The antigen was retrieved before immunofluorescence, and MLMECs were grown on a Confocal Dish (Dianrui, Shanghai, China) with proper treatment. Cells were fixed with 4% paraformaldehyde and ruptured using 0.1% Triton X-100. After blocking with 5% donkey serum, cells were prepared for immunofluorescence. Both were incubated with goat anti-mouse primary antibody to SDC1 (1:100; af3190, R&D Systems). They were then incubated with secondary antibodies conjugated to Alexa Fluor-488 (1:100; A12398, Thermo Scientific). For immunocytochemistry, HUVECs were incubated with rabbit anti-human primary antibody to SDC1 (1:100; ab128936, Abcam). They were then incubated with secondary antibodies conjugated to Alexa Fluor-488 (1:100; ab150077, Abcam). For the detection of heparan sulfate, MLMECs/HUVECs were incubated with primary mouse IgM to F58-10E4 (1:100; 370255-S, Amsbio) and then with secondary antibodies conjugated to Alexa Fluor-488 (1:1000; A10680, Thermo Scientific). Cell nuclei were counterstained with 4,6′-diamidino-2-phenylindole (DAPI). After staining, the cells were observed under a confocal laser scanning microscope SP8 (Leica Microsystems, Wetzlar, Germany), and images were recorded with LAS AF Lite 2.6.0 (Leica Microsystems, Wetzlar, Germany).
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6

Western Blot Protein Expression Analysis

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Western blot analysis was conducted using an SDS-PAGE electrophoresis system (Bio-Rad Laboratories, Hercules, CA, USA). Briefly, the total protein content was extracted from tissue or 8 groups of experimental cells using a RIPA buffer (P0013C, Beyotime, Shanghai, China). Protein samples were separated by SDS-PAGE and transferred onto nitrocellulose membranes (88,520, Thermo Fisher Scientific, Waltham, MA, USA), which were subsequently blocked 12 h at 4℃ with 5% skimmed milk containing TBST (Tris-buffered salt solution, containing 50 mmol/L Tris-HCl, 150 mmol/L NaCl, 0.1% v/ v Tween-20, pH 7.4) solution. Antibodies against SDC1 (ab128936; Abcam, Cambridge, MA, USA), SORBS1 (ab224129; Abcam, Cambridge, MA, USA), and GAPDH (T0004; Affinity Biologicals, Cincinnati, OH, USA) were used as primary antibodies. The samples were incubated with horseradish peroxidase–conjugated secondary antibodies at 37℃ for 1 h. The membrane was imaged using an Amersham Imager 600 (GE Healthcare UK Limited, Little Chalfont, UK).
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7

ACE2 and Syndecan-1 Expression in Cells

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HEK293T hACE2 and VeroE6 cells were treated with 30 μM KSL-128114 or DMSO for 6 h, and then fixed in 4% formaldehyde. Cells were then either permeabilized in 0.5% Triton X-100 or left unpermeabilized. Then, cellular expression of ACE2 or Syndecan-1 were detected by rabbit monoclonal antibodies (ACE2, Novus bio, NBP2-67692, 1:500, Syndecan-1, abcam, ab128936 2 μg/mL) and secondary donkey anti-rabbit Alexa Fluor 488 (1:2000, Thermo Fisher Scientific). Cellular fluorescence was measured using a TROPHOS plate RUNNER HD.
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8

Multiplex Immunofluorescence Profiling of Tumor Microenvironment

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We performed the multiplex immunofluorescence experiments by using the CD8 anti‐human antibody (Ab) (ab101500), EPCAM anti‐human Ab (Abcam, ab223582), cytokeratin‐8 anti‐human Ab (Abcam, ab53280), cytokeratin‐19 anti‐human Ab (Abcam, ab76539), collagen‐IV (COL4A1) anti‐human Ab (Abcam, ab214417), SDC1 anti‐human Ab (Abcam, ab128936), CD3 anti‐human Ab (Abcam, ab16669), CD56 anti‐human Ab (Abcam, ab75813), CCL22 anti‐human Ab (Abcam, ab23772) and 4′,6‐diamidino‐2‐phenylindole staining solution (Abcam, ab228549). Following the manufacturer's instructions (Akoya, Opal Polaris 7 Color Automation IHC Detection Kit), we scanned the slides with the Akoya Vectra Polaris Automated Quantitative Pathology Imaging System and quantified the results by using Akoya Inform software.
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9

Exosomal Protein Extraction and Analysis

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Protein from exosomes or renal tissues was extracted using radio-immunoprecipitation assay buffer and quantified by bicinchoninic acid protein (Pierce). The protein was boiled with loading buffer at 95 °C for 5 min (40 µg/well), separated by 10% polyacrylamide gel electrophoresis, and transferred to a polyvinylidene fluoride membrane. The membrane was blocked by 5% bovine serum albumin for 1 h, added with primary antibodies CD9 (1:1000, ab92726), CD63 (1:1000, ab134045), syndecan-1 (1:1000, ab128936), heparanase-1 (1:1000, ab59787) (all from Abcam, Cambridge, MA, USA), CD81 (1:500, sc-166029, Santa Cruz Biotechnology, CA, USA), RUNX1 (1:1000, 39000, Active Motif, Carlsbad, CA, USA), and GAPDH (1:1000, Beyotime Institute of Biotechnology, Shanghai, China) at 4 °C overnight, then incubated with the corresponding secondary antibody (1:3000, MT-BIO, Shanghai, China) and developed by chemiluminescence reagent. GAPDH was used as the endogenous control. Bio-rad Gel Doc EZ imager (Bio-rad, CA, USA) was utilized for development. The gray value was analyzed by Image J software.
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10

Comprehensive Protein Extraction and Western Blot Analysis

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Total proteins were extracted from tissues using RIPA Lysis Buffer (Beyotime, Haimen, Jiangsu, China). Equal amounts of the protein were separated using sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane, followed by overnight incubation with primary antibodies at 4°C. Primary antibodies against the following proteins were used: Pi3k (1:300, 20584-1-AP, Proteintech), Jak2 (1:4,000, ab108596, Abcam), Gng7 (1:800, GTX65584, GeneTex), Jun (1:1,500, 66313-1-Ig, Proteintech), IL-6 (1:1,000, ab9324, Abcam), Met (1:1,500, ab51067, Abcam), Pdgfra (1:1,000, ab203491, Abcam), Camk2b (1:1,000, ab34703, Abcam), Ptgs2 (1:1,000, ab15191, Abcam), Sdc1 (1:1,000, ab128936, Abcam), and Gapdh (1:10,000; SAB2100894; Sigma–Aldrich; Merck KGaA). Target protein expression was normalized to Gapdh expression.
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