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4 protocols using pe conjugated anti gata3

1

Multicolor Flow Cytometry Analysis of Murine BALF

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Cells were collected from BALF and resuspended in a buffer containing 154 mM NH4Cl, 10 mM KHCO3, and 0.1 mM EDTA for red blood cell lysis for 5 minutes. After washing with PBS containing 2% FBS, cells were stained with anti-CD45.2 (Biolegend; 109808), anti–Siglec F (Invitrogen; 12-1702-82), anti–Gr-1 (BioLegend; 108412), anti-CD4 (Biolegend; 100516), anti-CD8a (Biolegend; 100708), anti-Mac-1 (CD11b) (Biolegend; 101208), anti-CD11c (Biolegend; 117307), anti-NK-1.1 (Ly-55) (Biolegend; 108707), anti-B220 (Biolegend; 103211), or anti-IgG2a (Biolegend; 407109) antibodies for 30 minutes on ice. To confirm the Th2 cell differentiation, cells were collected from BALF and fixed with 1% paraformaldehyde (PFA) and permeabilized with PBS containing 0.1% Triton X-100 and 0.2% bovine serum albumin for 3 minutes. The cells were then incubated with PE-conjugated anti-GATA3 (Invitrogen; 12-9966-42) and APC-conjugated anti-CD4 (Biolegend; 100516) antibodies for 1 hour. Flow cytometry analysis was performed using a Guava easyCyto flow cytometer (Merck Millipore).
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2

Multiparametric Flow Cytometry of Immune Cell Subsets

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Single-cell suspensions were incubated with Fc Block CD16/32 (Invitrogen, 14-0161-85). The cells were then incubated with a 1:200 dilution of antibody for surface stains and Live/Dead Ghost Dye Violet 510 (Tonbo Biosciences; 13–0870). Surface antibodies: 488-conjugated CD8 (Invitrogen; 53–008182), APCe780-conjugated anti-TCRβ (Invitrogen; 47-5961-82), e450-conjugated anti-CD4 (Invitrogen; 48-0042-820), 488-conjugated anti-CD11b (Invitrogen; 53-0112-82), and APC-conjugated anti-CD45.2 (Biolegend; 109813). For transcription factor staining, the eBioscience FoxP3/Transcription Factor Staining Kit (00-5523-00) was used per manufacturer’s instructions with intracellular antibodies: PE-conjugated anti-RORγT (Invitrogen; 12-6981-82), PE-Cy7-conjugated anti-FoxP3 (Invitrogen; 25-5773-82), PE-conjugated anti-GATA3 (Invitrogen; 12-9966-42), PE-Cy7-conjugated anti-Tbet (Biolegend; 644824). OneComp eBeads (Thermo Fisher Scientific, 01-111-42) were used for color controls. Flow cytometry was performed using a Beckman Coulter Gallios flow cytometer and data were analyzed with FlowJo software v10.7.1.
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3

Multiparametric Flow Cytometry Assay

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Negatively isolated CD3+ T cells were stained with PE Cy7-conjugated anti-CD4 and PerCP Cy5.5-conjugated anti-CD8 with or without phycoerythrine (PE) or brilliant violet 510 (BV510)-conjugated anti-CD25 (all from BD Biosciences). The cells were permeabilized as per the manufacturer’s instructions and stained with Alexa Fluor (AF)-488 or AF-647 conjugated anti-pS6RP to assess mTORC1 (Cell signaling, Danvers, MA), violet 450 (V450) conjugated anti-pAkt to assess mTORC2 (BD Biosciences), AF-647-conjugated anti-FoxP3 (Biolegend, San Diego, CA), and PE-conjugated anti-GATA-3 (eBioscience). For cytokine detection, FITC-conjugated anti-IFN-γ, allophycocyanin (APC) conjugated anti-IL-4, and PE-conjugated anti-IL-17 were used alone or together. For intracellular cytokine staining, cells were pre-incubated with phorbol myristate acetate (PMA, 5 ng/ml) and ionomycin (500 ng/ml) for 6 hours and with brefeldin A for 5 hours (10 µg/ml; all from Sigma-Aldrich). Isotype control antibodies included FITC-conjugated mouse IgG1, PE-conjugated mouse IgG1 kappa, PE conjugated rat IgG2b kappa, BV510 conjugated mouse IgG1, V450 conjugated mouse IgG1, and APC-conjugated mouse IgG1. All isotype control antibodies were obtained from BD Biosciences except for PE conjugated rat IgG2b kappa, which was obtained from eBioscience.
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4

Multicolor Flow Cytometry for Cell Identification

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To exclude dead cells from the analysis, single-cell suspensions were stained with a fixable viability dye (Zombie NIR, BioLegend), followed by staining for surface antigens with a combination of the following fluorescence-conjugated mAbs: Brilliant Violet 421-conjugated anti-Thy1.2 (53-2.1) (BioLegend), PEDazzle594-conjugated anti-CD19 (6D5) (BioLegend), Brilliant Violet 605-conjugated anti-CD11b (M1/70) (Thermo Fisher Scientific), Brilliant Violet 711-conjugated anti-CD4 (RM4-5) (BioLegend), Brilliant Violet 785-conjugated anti-CD8a (53-6.7) (BioLegend), Brilliant Violet 650-conjugated anti-NK1.1 (PK136) (BioLegend), Alexa Fluor 700-conjugated anti-CD3 (17A2) (BioLegend), and BUV395-conjugated anti-CD45 (30-F11) (BD Biosciences). Cells were then fixed and permeabilized using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience), followed by staining for intracellular antigens using the following mAbs (all from eBioscience): AF488-conjugated anti-FoxP3 (FJK-16s) and PE-conjugated anti-Gata3 (TWAJ). Samples were acquired on a Fortessa (BD Biosciences) and analyzed with FlowJo 10 software (BD Biosciences).
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