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Up100h ultrasonic processor

Manufactured by Hielscher
Sourced in Germany

The UP100H Ultrasonic Processor is a laboratory equipment designed for ultrasonic processing applications. It generates high-frequency ultrasonic waves that can be used for tasks such as homogenization, emulsification, and cell disruption.

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9 protocols using up100h ultrasonic processor

1

Sdc-1 siRNA Transfection and HA Treatment

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For protein experiments, 2.0 × 105 cells were cultured in six-well plates, transfected with control or Sdc-1 siRNA as described before, and treated with HA for 48 h. Samples were collected in 100 µL of 2× protein sample buffer Laemmli and sonicated with Ultrasonic Processor UP100H (Hielscher GmbH, Hamm) to prepare cell lysates.
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2

Proteasome Activity Assay in Breast Cancer Cells

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MDA-MB-231, MDA-MB-468 and T47D (6 × 105) cells were seeded in 5 mL of culture media, exposed to various concentrations of wedelolactone, DMSO or 10 μM MG132 for 10 h. Cells were harvested, resuspended in cell lysis buffer (40 mM Tris, pH 7.2, 50 mM NaCl, 2 mM β-mercaptoethanol, 2 mM ATP, 5 mM MgCl, 10% Glycerol) and briefly sonicated using an Ultrasonic Processor UP100H (Hielscher, Ringwood, NJ, USA). Cell lysates were cleared by centrifugation and protein concentration in supernatant was determined using DC protein assay (Biorad, Hercules, CA, USA). Protein extract (50 μg) was mixed with 50 μM of fluorogenic substrates (UBPBio) in 1× Proteasome Assay Buffer in a total volume of 100 μL. Fluorescence was measured by TECAN infinite 200 plate reader (TECAN) for 1 h at 37 °C.
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3

Immunoblotting Analysis of NF-κB Signaling

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For analysis of NIK accumulation, p100 to p52 processing, expression of TRAF1 and TWEAK, and phosphorylation and degradation of IκBα cells were washed once with PBS, harvested using a rubber policeman, centrifuged, and then directly lysed in 4× Laemmli sample buffer (approximately 1 × 106 cells per 100 μl buffer; 5 min, 95°C) supplemented with complete protease inhibitor from Roche Applied Science and phosphatase inhibitor mixtures I and II from Sigma. Lysates were sonicated for 15 s with maximum amplitude (UP100H Ultrasonic Processor, Hielscher, Germany), heated for 5 min at 95°C and centrifuged for 3 min (Eppifuge, full speed) to remove residual insoluble debris. Lysates were further processed using standard protocols for SDS-PAGE and immunoblotting using horse radish peroxidase-conjugated secondary antibodies (Dako) and the ECL Western blotting detection reagents and analysis system (Amersham). Primary antibodies used were anti-IκBα (clone C35A5, Cell Signaling), anti-pIκBα (clone 14D4, Cell Signaling), anti-NIK (#4994, Cell Signaling), anti-p100/p52 (#05-361, Upstate), anti-TRAF1 (H-132, Santa Cruz), anti-TWEAK (#AF1090, R&D Systems,) and anti-tubulin (clone DM1A, Neomarker).
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4

Tissue Cholesterol and Triglyceride Quantification

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Liver and pancreas samples were homogenized (homogenization buffer: 20 mM TrisBase; 150 mM NaCl; pH 7.8; 0.05% TritonX100) with a sonicator (4 °C; 3 × 10 s; Hielscher UP100H Ultrasonic Processor [Hielscher Ultrasonics, Teltow, Germany]) and centrifuged (1000 g; 5 min; 4 °C). Tissue cholesterol and triglyceride were measured from the supernatant by enzymatic colorimetric assays according to the manufacturer’s instructions (CHOD-PAP and GPO-PAP assays; Cobas-Roche, West Sussex, England).
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5

Nuclear Protein Extraction for ChIP-seq

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Cross-linked cell pellets containing 335,000 to 500,000 cells were thawed on ice. The 6- to 10-μl pellets were added to lysis buffer [50 mM tris-HCl (pH 8.0), 10 mM EDTA (pH 8.0), 1% SDS, 20 mM sodium butyrate, 1 mM phenylmethylsulfonyl fluoride (PMSF), and protease inhibitor cocktail] to a total of 160 μl and incubated on ice for 10 min. The samples were sonicated for 8 × 30 s using the UP100H Ultrasonic Processor (Hielscher) fitted with a 2-mm probe. We allowed 30-s pauses on ice between each 30-s session, using pulse settings with 0.5-s cycles and 27% power. After the final sonication, 340 μl of standard RIPA (with 20 mM sodium butyrate, 1 mM PMSF, and protease inhibitor cocktail) was added to the tube while washing the probe, followed by thorough mixing by pipetting. Twenty microliters was removed as input, and the remaining solution was diluted further with 1 ml of standard RIPA buffer (with 20 mM sodium butyrate, 1 mM PMSF, and protease inhibitor cocktail). The samples and inputs were centrifuged at 12,000g in a swinging-bucket rotor for 10 min at 4°C, and the supernatants were transferred to a 1.5-ml tube on ice. Sixty-six thousand to 100,000 cells were used per IP.
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6

Sonication-based RNA Immunoprecipitation Protocol

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The samples were sonicated for 2.5 × 30 sec using a UP100H Ultrasonic Processor (Hielscher) fitted with a 2-mm probe using pulse settings with 0.5 sec cycles and 27% power. Each sonication cycle was 30 seconds sonication plus 30 seconds on ice. After sonication, 7 μl was taken for regular RNA-seq sequencing as Input control, and the remaining 73 μl was subjected to immunoprecipitation. After that, 7 μl nuclease-free water and 20 μl 5× IP buffer (50 mM Tris–HCl pH 7.5, 750 mM NaCl, 0.5% (vol/vol) NP-40 and 5 U μl−1 RiboLock RNase inhibitor) were added to the 73 μl samples. The final volume was 100 μl.
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7

Optimized Nucleic Acid Sonication Protocol

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A UP100H Ultrasonic Processor (Hielscher) with a 2-mm probe was used to sonicate the samples, using pulse settings with 0.5-s cycles and 27% power. The samples underwent n × 30 s sonication cycles, with 30 s of sonication followed by 30 s on ice for each cycle. The numbers (n) of sonication cycles used in this study for different amounts of input were optimized and can be found in Supplementary Table 1. For mouse liver samples, 10 ng and 100 pg were used to construct input libraries after sonication. RNA from pools of zygotes was used for input controls for single zebrafish zygotes (Supplementary Table 1). In the case of single mouse oocytes and early embryos, 10% of multiple oocyte/embryo RNA was removed and served as input control (Supplementary Table 1). To the samples consisting of 80 μl, 20 μl of 5× IP buffer (50 mM Tris-HCl (pH 7.5), 750 mM NaCl, 0.5% (vol/vol) NP-40 and 5 U μl−1 RiboLock RNase inhibitor) was added to make a final volume of 100 μl for sonication.
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8

Ternary Phase Diagram Analysis of Nanoemulsions

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Ternary phase diagrams composed of S—surfactant (CAPB or CB), O—oil (OA or LA), and W—water, i.e., S:O:W systems were prepared via a composed aqueous titration-ultrasound method to examine the phase behavior of the samples. The phase boundaries were determined by the stepwise addition of water to the weighted mixture of the S:O:W components. After the addition of each portion of water, the samples were sonicated by a tip sonicator (UP100H ultrasonic processor developed by Hielscher Ultrasonics GmbH, Teltow, Germany; cycle, 0.9; amplitude, 80%) for 2 min and kept in thermostated baths at 25 °C to equilibrate. The amount of aqueous phase added was varied to obtain a water concentration ranging from 5% to 99% of the total volume in about 5% intervals. The boundary lines drawn on the phase diagram lie at equal distances between consecutive experimental measurements on both sides of the phase boundary. Visual observation was made after each 5% addition of the aqueous phase to the S:O mixture and its equilibration. Based on the visual assessment, the obtained formulations were categorized as follows: (i) transparent and translucent with a blue sheen: oil-in-water (o/w) nanoemulsion (NE); (ii) milky or cloudy: emulsion (E); (iii) two separate phases (2Ph). Selected formulations were subjected to further physicochemical characterization.
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9

Suspension and Characterization of ONCs

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To facilitate the suspension of the different ONCs (with and without GMA or EGDMA), the pH of the suspension was adjusted to 11 with NaOH 0.5 M obtaining the salt form of the carboxylic acid (more hydrophilic). ONCs were further suspended by sonication with an immersed probe at 0 °C (UP100H Ultrasonic Processor, Hielscher, Teltow, Germany), with an output power of 100% (100 Watt ultrasonicator) for one hour (with a stop of a few minutes every 15 min).
The suspension was used for preliminary characterization (DLS, TEM) and for mortar preparation. After ultrasonication, an aliquot was lyophilized to obtain the yield percentage for each reaction, which varied between 60 and 70%, and to conduct IR and SEM analyses.
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