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7 protocols using anti brdu monoclonal antibody

1

Quantification of DNA Synthesis in Proliferating Cells

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DNA synthesis in proliferating cells was determined by measuring BrdU incorporation with a BrdU ELISA assay [28 (link)]. For this purpose, the cells were seeded in 96-well culture plates at a density of 10,000 cells/well. Phosphatidylcholine nanoparticles at 0.1 and 0.01% were added in 100 μL of medium in absence of serum. Cells were further incubated at 37°C for 48 hours in a 5% CO2 atmosphere. BrdU (0.01 M final concentration) was added to the cells 16 hs before the end of incubation with PC nanoparticles. At the conclusion of labeling, cultures were rinsed with phosphate buffered saline (PBS), pH 7.0, fixed with 70% EtOH, denatured with 2 M HCl (100 μL/well, 10 minutes, 37°C), and neutralized with 0.1 M Trizma buffer, pH 9. Cells were then incubated with monoclonal anti-BrdU antibody (50 μL/well; 1 μg/mL final; Roche, USA) at 37°C for 60 minutes, washed with PBS, and incubated with goat anti-mouse IgG horseradish peroxidase (HRP) conjugate at 37°C for 30 minutes. Afterwards, cells were washed and labeling evidenced with tetramethylbenzidine (TMB). Triplicates were run for each treatment. Values were expressed in terms of percent of untreated control cells.
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2

BrdU Incorporation Assay Protocol

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BrdU incorporation assays were conducted as described previously [56 (link), 58 (link)]. Briefly, cells were labeled with 10 μM BrdU for 10 hours and then fixed with 95% ethanol and 5% acetic acid and treated with 2M HCl containing 1% Triton X-100. The cells were stained with monoclonal anti-BrdU antibody (Roche), followed by staining with Alexa Fluor 546 (red) goat anti-mouse antibodies and 4′, 6′-diamidino-2-phenylindole (DAPI). Stained cells were imaged in five randomly selected fields with an EVOS fluorescence microscopy. The BrdU-positive cells were counted and quantified using the ImageJ software.
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3

Autophagy Regulation in Cancer Cells

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Chloroquine were obtained from Sigma–Aldrich. Primary antibodies against the following proteins were used in this study: phosphorylated and total forms of Akt and mTOR, Beclin 1 and LC3 were purchased from Cell Signaling Technology; LAMP 1 from Santa Cruz Biotechnology (Santa Cruz, CA), ATG5 from ABGENT, p62 from Bethyl; and monoclonal anti-BrdU antibody from Roche Applied Science. CDK6, CCNE, CCNA1, CCNA2 and CCNB2 from Abcam. To confirm equal loading, membranes were reproved with an anti-GAPDH antibody (Hangzhou Goodhere).
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4

Antibody Characterization for Cellular Signaling Analysis

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Anti-Src, anti-Erk, anti-phospho Erk, anti-caspase 3 and anti-syndecan-1antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA); Anti-phospho-Src (Tyr416), anti-phospho-STAT3 and anti-cleaved caspase 3 antibodies were purchased from Cell Signaling Technologies (Beverly, MA). Anti-V5 antibody was purchased from Invitrogen (Carlsbad, CA), anti BrdU monoclonal antibody was from Roche (Indianapolis, IN), and anti actin monoclonal antibody was from Sigma (St. Louis, MO). Recombinant CXCL10, anti CXCR3 monoclonal antibody and Quantikine® ELISA for human CXCL-10 were purchased from R&D Systems (Minneapolis, MN) and anti CXCL10 antibody was from PeproTech (Rocky Hill, NJ). Rabbit polyclonal antibody #1453 was prepared against purified 65 kDa heparanase 27 (link). Anti-mouse platelet endothelial cell adhesion molecule (PECAM)-1 (CD31) polyclonal antibody was kindly provided by Dr. Joseph A. Madri (Yale University, New Haven, CT) 29 (link). HRP-conjugated goat anti-rabbit/mouse antibodies were purchased from Jackson ImmunoResearch (West Grove, PA). Human CXCL10 cDNA was purchased from OriGene (Rockville, MD) and sub-cloned into NSPI-CMV-MCS-myc-HIS viral plasmid 15 (link). Anti-heparanase and anti-CXCL10 shRNAs (GIPZ lentiviral shRNA) were purchased from Thermo Scientific (Waltham, MA).
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5

BrdU Labeling Techniques in Mice

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The standard BrdU labeling methods that were used have been described previously58 (link). Briefly, P14 and P28 mice were intraperitoneally injected with 50 μg/g of BrdU (Sigma-Aldrich Japan, Tokyo, Japan) twice at an interval of 8 h, and subjected to a histological analysis. Anti-BrdU monoclonal antibody was purchased from Roche Diagnostics Japan (Tokyo, Japan). A confocal laser scanning microscope system (A1 series, Nikon) was used to capture the microscopic images.
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6

Measuring cell proliferation by BrdU incorporation

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Cell proliferation measured with 5-bromo-20-deoxy-uridine labelling was performed with a Detection Kit II (Roche Diagnostics Corporation, Indianapolis, IN, USA) following the manufacturer’s instructions. Briefly, K562 cells stable silenced for ZNF224 were plated at a density of 3 × 105 cells/ 6-well plate. To obtain ZNF224 overexpression, 4 × 105 K562 cells were transiently transfected with 7 µg of 3X-Flag ZNF224 expression plasmid or 3X-Flag empty vector for 24 hours, and then 2 × 105 of transfected cells were plated into 6-well plates. K562 cells knocked-down or ovexpressing ZNF224 were incubated in the presence of 10 μM BrdU for 3 or 5 hours, then collected, fixed with ethanol and incubated with anti-BrdU monoclonal antibody (Roche). The percentage of BrdU incorporation was measured on FACS flow cytometer (BD Biosciences Accuri C6 Flow Cytometer).
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7

BrdU Incorporation Analysis in Mice

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Mice received an intraperitoneal injection of BrdU 120 mg/kg body weight 1 h before sample harvesting. BrdU incorporation was detected by immunohistochemistry of paraffin-embedded sections using an anti-BrdU monoclonal antibody (Roche).
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