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Ez c1 viewer

Manufactured by Nikon

The EZ-C1 viewer is a software application designed to view and analyze images captured with Nikon's digital microscopes. It provides basic image viewing and processing functionality.

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4 protocols using ez c1 viewer

1

Quantifying Liposome Fluorescence Dynamics

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We used EZ-C1 viewer (Nikon, version 3.50) to measure the diameter of liposomes and the fluorescence intensity of their interiors, their membranes and the surrounding solution as a function of time. We determined that the fluorescence intensity was linearly related to the concentration of Rho123 in solution (see Supporting Information, Fig. S2). To overcome any experimental variation, we performed a two point calibration before each experiment to determine the Rho123 concentration from fluorescence intensity values using the average intensity inside GUVs without P-gp at the starting time (concentration of Rho123 ~ 0 µM) and the average intensity of the solution outside of GUVs at the starting time (concentration of Rho123 = 1 µM). For the analysis of Ps and kT, we omitted liposomes that were clearly not unilamellar or that visibly contained small vesicles inside (see Supporting Information, Fig. S5), as well as liposomes whose fluorescence increase did not follow the model represented by Eq. (2) (i.e. R2 < 0.9). The time-dependent fluorescence increase (and hence the increase in Rho123 concentration) of most liposomes could, however, be described very well with Eq. (2) (R2 > 0.98).
We used a non-parametric Kruskal–Wallis test in Origin 8.0 to assess the statistical significance of the data for each experimental condition.
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2

Fluorescence Microscopy of Soybean Pathogens

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Cultivars Bell and Corsoy 79 were inoculated at the V1 growth stage as described with isolates PgA-GFP and PgB-RFP separately and with 1∶1 mixture of conidia of both isolates. Inoculated and non-inoculated plants were grown, symptoms assessed, and plant tissues sectioned as described. A Nikon C1si laser scanning confocal microscope (LSCM) at the University of Minnesota Imaging Center was used for fluorescent microscopic analysis, which allows unmixing of autofluorescence from the plant and fluorescence from GFP and RFP isolates. Images of the GFP isolate were acquired by excitation with a 488 argon laser at 12% intensity in standby modus, and images of the RFP isolate were acquired following excitation at 561 nm at 15% intensity, with the fluorescence being detected with 32-channel photo multiplier tubes (PMTs) at a range of 505 to 680 nm which were corrected for differential wavelength sensitivity. A spectral gain of 160 and pixel dwell speed of 6 µs was used. The images were projections of a z-series (maximum intensity projection images) collected at 0.5 micron steps. The z-series merger and unmixing of autofluorescence and GFP and/or RFP fluorescence was done using known GFP and RFP spectra (Clontech, Mountain View, CA) and by selecting regions of auto-fluorescence in control plants using the Nikon EZ-C1 Viewer (v3.60).
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3

Immunofluorescence Imaging of SH-SY5Y Cells

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SH-SY5Y cells were fixed in 4% paraformaldehyde, stained with indicated primary and secondary antibodies, and then processed for indirect immunofluorescence confocal microscopy as previously described [48 (link)]. Images were acquired with a Nikon C1 confocal laser-scanning microscope, exported in TIFF format with the Nikon EZ-C1 viewer (Nikon Instruments Inc., Melville, NY) and processed using Adobe Photoshop CS4 (Adobe Systems, Inc.) to adjust contrast and brightness.
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4

Brightfield and Confocal Imaging of Adult Fish and Embryos

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Color brightfield images were taken of adult fish by first anesthetizing them in 0.05% tricaine and then pictures were taken with a Nikon E5700 camera on a Nikon SMZ 1500 microscope. Embryos were anesthetized in 0.02% tricaine and mounted in 1% low-melting point agarose in fish water. Images were captured using a Nikon Eclipse 80i microscope and NIS Elements software.
Confocal microscopy was performed using a Nikon Eclipse E600FN or E800 confocal microscope. Images were generated using the Nikon EZ-C1 viewer (Nikon Instruments, Melville, NY), Adobe Photoshop and Illustrator (Adobe Systems, Inc., San Jose, CA), and Metamorph (Molecular Devices, Inc., Sunnyvale, CA) software.
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