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13 protocols using st5010

1

Histological Analysis of HGSC Tissue

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Tissue samples were fixed in 10% Formalin and embedded in paraffin wax (Leica RM2255 microtome). Sections were cut in Palm slides and underwent Haematoxylin&Eosin (H&E) staining and automated Immunohistochemistry staining (Leica ST5010). Histology slides were imaged on a Pannoramic 250 Slide Scanner (3DHISTECH) and images exported to ImageJ. Images were converted to RGB stacks and a threshold was set across all images to identify positive staining. H&E and PAX8 staining was used to identify HGSC tissue. Regions of interest (ROIs) were then manually drawn around discrete areas of HGSC tissue. The data were reported as the total area percentage of the ROI staining positive. PAX8: Abcam ab13611, 1:100; F4/80: Biorad MCA497GA, 1:1000; Adenovirus: Abcam ab8251, 1:1000; DX5: Abcam ab133557, 1:250.
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2

Detailed Retinal Morphology Analysis

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The protocol for mouse eye sections has been described previously66 (link). The eyes, including the appendages, were collected and fixed overnight in Davidson’s fixative (BBC Biochemical, Mount Vernon, WA, USA). The fixed eyes were excised to balance the pressure and preserve the morphology. They were then processed routinely and embedded in paraffin wax (ASP300S, Leica, Wetzlar, Germany). Subsequently, the eyes were cut into 7-μm retinal cross sections and stained with H&E (BBC Biochemical) using an autostainer (ST5010, Leica). Images were obtained using an Olympus BX51 microscope (Olympus, Tokyo, Japan). The retinal thickness was measured using the Nuance 3.02 software (PerkinElmer, Waltham, MA, USA).
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3

Evaluating Cartilage Degeneration via Histology

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After microCT scanning, the same hindlimbs were dissected free of muscle and decalcified (CalEX, Fisher Scientific, Ottawa, ON). Sagittal sections 8 μm thick were cut through the entire knee (Leica RM2255) after dehydration and paraffin embedding. Sections were stained with Weigert’s iron hematoxylin (Sigma), 0.2% fast green, and 0.01% safranin-O using an automated processor (Leica ST5010) prior to being coverslipped. One section from the center of each contact region was imaged (Zeiss Axiostart plus, AxioCam ICc1) and histologicaly graded by 3 blinded graders using a modified Mankin grading scheme38 (link).
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4

Histological Analysis of Vascular Tissue

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After fixation, strips were stepwise dehydrated (Leica TP1020, Semi-enclosed benchtop tissue processor, Germany) and embedded in paraffin wax blocks. Strips were either embedded to get 1) axial cross-sections – such that the lumen was oriented perpendicular to the face of the wax block or 2) with the luminal side of the strip flush with the face of the wax block to achieve cross-sections radially through the wall thickness. The integrity of the strip after mechanical testing dictated which of these options was most feasible; specifically, if it was not possible to orient the samples such that axial cross-sections could be obtained, the samples were oriented to get radial cross-sections. Samples were sectioned at 7 μm using Feather C35 microtome blades. Samples were stained with Haematoxylin & Eosin (H&E), picrosirius red (PSR) and Verhoeff’s elastin (Leica ST5010, Autostainer XL, Germany). Brightfield imaging of all stains was performed on an Aperio CS2 microscope with ImageScope software V12.3 (Leica Biosystems Imaging, Inc., Vista, California). Polarised light microscopy (PLM) was performed on the PSR-stained samples using an Olympus BX41 microscope with Ocular V2.0 software (Teledyne Photometrics, Tuscon, Arizona). Two PLM images were taken for each slice, 45° to each other, with the exposure time kept consistent across all samples.
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5

Immunohistochemical Analysis of Skin Raft Samples

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Raft samples were harvested and fixed in a cell culture plate for ≥36 hrs in 10% NBF solution. Rafts were placed between two foam biopsy pads in a tissue cassette for FFPE tissue processing. Post processing, a razor blade was used to split the rafts to create two 3 mm wide rectangular samples for embedding. Four μm microtome sections were collected on slides for H&E and IHC. All routine H&E staining and IHC were conducted using an autostainer (ST5010; Leica) or automated immunostainer (Bond RX; Leica). Standardized IHC protocols were used for anti-loricrin (ab85679; Abcam), anti-S100A7 (NB100–56559; Novus Biologicals) staining. All stained tissue slides were digitized for image analysis using a whole slide digital pathology slide scanner with 20x objective and extended focus scanning parameters (P250; Perkin Elmer).
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6

Histological Analysis of Post-Surgical Tissue

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At 4 weeks after surgical operation (postop), animals were humanely killed under deep anesthesia. Samples were extracted and fixed in 4% paraformaldehyde. After decalcification, the specimens were embedded in paraffin and sectioned into 4 μm thick sections. For morphological study, sections were stained with hematoxylin and eosin (HE) with an autostainer (ST5010, Leica, Germany). For immunohistochemistry analysis, sections were subjected to immunostaining with mouse monoclonal anti-GFP (1 : 100, Santa Cruz, USA), rabbit polyclonal anti-rat osteocalcin (OCN) (1 : 100, Santa Cruz, USA), and rabbit polyclonal anti-human OPN antibodies (1 : 100, Proteintech Group, USA). Then all samples were photographed.
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7

Histological Analysis of Whole Brain

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The whole brain was carefully removed at 4 °C and fixed with 4% polyformaldehyde for 24 h. The brain was dehydrated with ethanol, cleared with anhydrous ethanol xylene and embedded in paraffin, then cut into 4 μm sections by paraffin microtome (Leica RM2245, Witzler, Germany). After it was dried, slices were used for HE staining with an automatic staining machine (Leica ST5010, Witzler, Germany). Finally, pathological analysis of the hippocampus was performed by a digital slice scanning system (3 DHISTECH MIDI, Budapest, Hungary).
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8

Histopathological Analysis of Colon Tissue

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The samples were washed with BBS distilled water and transferred to 70% ethyl alcohol for long-term storage. Afterwards, the colon tissues were embedded in paraffin and sectioned at five μm thickness (Leica, RM2245). Hematoxylin and 0.5% eosin were used for histopathological staining (Leica, ST5010). Under a light microscope (Leica, DM2000), tissue sections were viewed at a magnifying power of *100. Each group underwent four biological verifications.
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9

Immunohistochemical Analysis of Immune Checkpoints

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Paraffin-embedded tissue was sectioned at a thickness of 3.5 μm and baked at 60°C for 2 h. The paraffin slides were dewaxed with xylene and rehydrated in an ethanol series with an autostainer (Leica ST5010, Germany). For antigen retrieval, the tissue sections were placed in a flask filled with citrate buffer (pH 6.0) and heated to boiling for 5 min in a microwave oven, let rest for 5 min, reheated to boiling for 2 min, and let cool to room temperature. After blocking of endogenous peroxidase activity, the sections were incubated with primary antibodies (BTLA, dilution 1:320, catalog number: 21300-1-AP, Proteintech, Chicago, IL; PD-L1 dilution 1:200, catalog number: 66248-1-Ig, Proteintech; and PD-1, dilution 1:200, catalog number: 18106-1-AP, Proteintech) overnight at 4°C. The sections were then incubated with secondary antibodies at room temperature for 30 min, detected with a DAB kit (DAB-1031; MXB Biotechnology, China) under a microscope, and then counterstained with hematoxylin for about 3 min. Finally, they were dehydrated in gradient alcohol and then in a xylene bath by autostainer before being mounted.
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10

Multimodal Imaging Techniques for Comprehensive Analysis

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The following instruments were used in this study: Circular Chromatograph J-715 (JASCO), Microplate Reader (Bio-Rad Laboratories, Inc.), Inverted Fluorescence Microscope (Nikon ECLIPSE Ti; Nikon Corporation), Laser Confocal Microscope (Leica TCS SP5 II; Leica Microsystems, Inc.), Scanning Electron Microscope QUANTA 200 (Thermo Fisher Scientific, Inc.), small animal imaging system (Kodak), automatic dyeing machine (LEICA ST5010) paraffin embedding machine (LEICA EG1150H), and rotary slicer (LEICA RM2235) (all Leica Microsystems, Inc.).
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