The largest database of trusted experimental protocols

1 569 protocols using vt1200

1

Lignification and GUS Localization in Poplar

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hybrid poplar 717 and three independent PtPL1-18 overexpression lines were propagated by tissue culture and transferred to soil. Plant height and stem diameter were measured after 4 months of growth, from six randomly selected individual plants per line. Cross sections were made from the 12th internodes and the corresponding petioles using vibratome (Leica VT 1200S, Germany). The sections were stained with 5% (w/v) phloroglucinol in 12% (v/v) HCl for indication of lignification, and observed under bright field microscope (Olympus BX63, Japan) for digital imaging.
For GUS assay, internode 4, 7, and 12 of the main stem and their corresponding petioles were collected from transgenic plants carrying PtPL1-18pro:GUS, washed twice with 50 mM sodium phosphate buffer (pH 7.0), and incubated in X-gluc reaction solution (1 mM X-gluc, 50 mM sodium phosphate, pH 7.0, 0.1% Triton X-100, 1 mM potassium ferricyanide and 1 mM potassium ferrocyanide) at 37°C overnight. Then 40 μm thick cross sections were prepared using vibratome (Leica VT 1200S, Germany), cleared with 75% ethanol and observed under bright-field microscope (Olympus BX63, Japan).
+ Open protocol
+ Expand
2

Preparation of Medial Prefrontal Cortex Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
KCC2+/− and WT littermate mice aged P35–45 were anesthetized with isoflurane and rapidly decapitated. Brains were quickly removed and placed into ice-cold ACSF solution (composition in mM: 124 NaCl, 4 KCl, 26 NaHCO3, 1.26 NaH2PO4, 6 MgSO4, 1 CaCl2). A vibratome (Leica VT1200) was used to generate 300um thick medial prefrontal cortex (mPFC) coronal sections containing the anterior cingulate cortex (ACC) and prelimbic cortex (PrL). Slices were transferred to an oxygenated (95% oxygen, 5% CO2) holding chamber containing bicarbonate buffered ACSF at room temperature (composition in mM: 124 NaCl, 4 KCl, 26 NaHCO3, 1.26 NaH2PO4, 3 MgSO4, 2 CaCl2).
For the KCC2 inhibitor (VU0240511, Delpire et al., 2009 (link)) experiments, brains were removed from WT mice as described above, but then placed into ice-cold, modified NMDG-containing ACSF solution (composition in mM: 110 NMDG, 110 HCl, 3 KCl, 10 MgCl2 6H20, 1.1 NaH2PO4 H20, 0.5 CaCl2 dihydrate, 25 glucose, 3 pyruvic acid, 10 ascorbic acid, 25 NaHCO3). A vibratome (Leica VT1200S) was used to generate 300um thick mPFC coronal sections containing the ACC and PrL. Slices were allowed to recover in oxygenated (95% oxygen, 5% CO2) NMDG-based ACSF for 30 minutes at 34°C. Slices were then transferred to an oxygenated holding chamber at room temperature containing bicarbonate buffered ACSF as per above.
+ Open protocol
+ Expand
3

Preparation of Prefrontal Cortex and Hippocampus Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
Three- to four-week-old adult mice were deeply anesthetized with pentobarbital sodium before rapid decapitation and removal of the entire brain into ice-cold, oxygenated cutting solution (220 mM sucrose, 3 mM KCl, 5 mM MgCl2, 1 mM CaCl2, 1.25 mM NaH2PO4, 26 mM NaHCO3, 10 mM glucose, 315 mOsm/l, 95% O2/5% CO2 and pH 7.3). Coronal slices (200 μm) of the prefrontal cortex (bregma 3.6–2.5 mm) were cut using a vibrating microtome (VT1200S; Leica), and then incubated in artificial cerebral spinal fluid (ACSF) (125 mM NaCl, 2.5 mM KCl, 2.5 mM CaCl2, 1.5 mM MgSO4, 1 mM NaH2PO4, 26.2 mM NaHCO3, 11 mM glucose, 305 mOsm/L and pH 7.3) for 1 h at 34 °C. Slices were stored at room temperature until experimental use.
For hippocampus slices, entire brains were placed into ice-cold, oxygenated cutting solution (130.05 mM NaCl, 4.96 mM KCl, 0.30 mM MgSO4, 11.02 mM MgCl2 * 6H2O, 20.01 mM HEPES, 1.5 mM CaCl2, 22.02 mM NaHCO3, 5.50 mM glucose, pH 7.3 adjusted by NaOH, 350–360 mOsm/l, 95% O2/5% CO2). The brain was then blocked for sectioning. Coronal slices (300–400 μm thick) were cut using a Vibratome (VT1200S, Leica), and incubated in ACSF (109.99 mM NaCl, 2.50 mM KCl, 2.50 mM CaCl2, 1.50 mM MgSO4, 1 mM KH2PO4, 26.19 mM NaHCO3, 11 mM glucose, 300–310 mOsm/L and pH 7.3) for 1 h at 34 °C. Slices were stored at room temperature until experimental use.
+ Open protocol
+ Expand
4

Hippocampal Slice Preparation and Electrophysiology

Check if the same lab product or an alternative is used in the 5 most similar protocols
For patch clamp electrophysiology and oscillation experiments, adult mice (>P60) were anesthetized using 4% isoflurane followed by decapitation, and the brains were extracted in warm (30–35°C) sucrose solution (40 mM NaCl, 3 mM KCl, 7.4 mM MgSO4.7H2O, 150 mM sucrose, 1 mM CaCl2, 1.25 mM NaH2PO4, 25 mM NaHCO3, and 15 mM glucose; osmolality 300 ± 10 mOsmol/kg). Horizontal hippocampal slices (350 μm thick) were cut using a vibratome (Leica VT1200S) and were placed in an interface chamber containing warm artificial cerebrospinal fluid (aCSF) (126 mM NaCl, 3.5 mM KCl, 2 mM MgSO4.7H2O, 1.25 mM NaH2PO4, 24 mM NaHCO3, 2 mM CaCl2, and 10 mM glucose; osmolality 300 ± 10 mOsmol/kg). For the fEPSP experiments, adult mice were sacrificed by cervical dislocation followed by decapitation and brains were extracted in ice-cold dissecting solution [87 mM NaCl, 25 mM NaHCO3, 10 mM glucose, 75 mM sucrose, 2.5 mM KCl, 1.25 mM NaH2PO4, 0.5 mM CaCl2, and 7 mM MgCl2]. Transverse hippocampal slices (300 μm thick) were cut using a vibratome (Leica, VT-1200S) and stored in dissecting solution at 35°C for 30 min and then in aCSF at 22°C for the duration of the experiment. All solutions were bubbled with carbogen gas [95% O2/ 5% CO2].
+ Open protocol
+ Expand
5

Blade Vibration Characterization of Tissue Slicers

Check if the same lab product or an alternative is used in the 5 most similar protocols
To characterize the blade vibration output vs input of MEGAtome, two laser displacement sensors (ZX2; Omron) were used to measure the displacement of M1 and M2. The sensors were mounted to the stationary ground of the machine; they were configured to emit laser beams perpendicular to the surfaces being measured. The sensors' resolution is 1.5 μm, the measurement range is ±5 mm. Same sensor was used to measure the real blade vibration output of Leica VT1200. To characterize the blade out-of-plane displacement vs in-plane displacement of MEGA-Slicer and Leica VT1200, three high-precision capacitance probes (CPL290; Lion Precision) were used to measure out-of-plane displacement of the blade at three different locations, including the left edge, right edge, and the center of the blade. The noncontact probes detect small displacement by sensing changes of the capacitance of the electric field between the probe and the conductive object surface. The resolution of the sensors is 5 nm RMS. At the same time, a laser displacement sensor was used to measure the in-plane blade vibration. Measurements for both machines were performed with the same 80 mm-long blade (D554G50; Sturkey).
+ Open protocol
+ Expand
6

Preparation of Horizontal Mouse Brain Slices

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were anesthetized with Euthasol-III (0.2 ml/kg, Med-Pharmex Inc., Pomona, CA, USA) and decapitated. Brains were quickly removed and placed in ice-cold (<4°C) sucrose solution containing the following reagents (in mM): NaCl 87, sucrose 75, KCl 2.5, CaCl2 1, MgCl2 7, NaH2PO4 1.25, NaHCO3 25, glucose 25, which was aerated with 95% O2 and 5% CO2, pH 7.4. Horizontal cortical slices at 300 μm thickness were cut using Leica VT1200S (Leica Microsystems Inc., Buffalo Grove, IL, USA). Slices were then incubated for 40 min at 36°C before being maintained at room temperature until recording. Slices were submerged in a recording chamber filled with oxygenated artificial cerebrospinal fluid (ACSF, in mM): NaCl 124, KCl 2.5, CaCl2 2, MgCL2 1, NaH2PO4 1.25, glucose 10, NaHCO3 26, pH 7.4.
+ Open protocol
+ Expand
7

Transcardiac Perfusion and Brain Sectioning

Check if the same lab product or an alternative is used in the 5 most similar protocols
Male C57Bl6/J mice (Taconic M&B, Denmark) were anesthetized with an intraperitoneal injection of 0.25 ml pentobarbital sodium (Apoteksbolaget, Sweden). Transcardiac perfusion was performed using phosphate-buffered saline (PBS) (137.0 mM NaCl, 2.70 mM KCl, 8.10 mM Na2HPO4) followed by 4% formaldehyde (HistoLab, Sweden) fixation. The brains were dissected and stored in 4% formaldehyde at 4°C overnight. The next day, the brains were washed twice in Tris-buffered saline (TBS) (0.04 M Trizma HCl, 0.01 M Trizma base, 0.15 M NaCl, pH 7.4) followed by 4% agarose gel (VWR, Germany) embedding. 70 μm coronal brain sections were cut with a vibratome Leica VT 1200 S (Leica Microsystems, Germany).
+ Open protocol
+ Expand
8

Rice Pollen Development Staging

Check if the same lab product or an alternative is used in the 5 most similar protocols
The developmental stages of the rice pollen were defined in the same methods described in Itoh et al. [30 (link)] and Fujita et al. [14 (link)], based on anther length. Spikelets of different developmental stages were collected, fixed in PFA, and dehydrated through an ethanol series. The samples were embedded in Technovit 7100 resin (Hereaus Kulzer) and polymerized at room temperature. Transverse sections of 3 µm were cut using a Leica VT1200S (Leica Microsystems, Wetzlar, Germany) and stained with 0.1% (w/v) toluidine blue O in distilled water (DW). The sections were visualized by microscopy (DMRB, Leica Microsystems, Wetzlar, Germany).
+ Open protocol
+ Expand
9

Hippocampal Slice Preparation from Mice

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hemi-brain slices from the dorsal hippocampus were obtained from male KO and WT mice at 8 months of age. Animals were sacrificed by decapitation, and the brain was rapidly extracted and transferred into a slicing chamber containing ice-cold ACSF ([in mM] 124 NaCl, 26.2 NaHCO3, 4.4 KCl, 1.3 MgSO4, 1 NaH2PO4, 2.5 CaCl2, 10 glucose, and 19.7 mannitol; pH 7.3–7.4) saturated with carbogen (95% O2/5% CO2). The brain was split into two hemispheres using a scalpel and sectioned into 400μm transverse slices using a vibratome (Leica VT1200s; Leica Microsystems, Concord, ON). Slices were then transferred into a submerged incubation chamber filled with ACSF, continuously bubbled with carbogen, maintained at 33.5°C, and allowed to recover for 2 h prior to recording.
+ Open protocol
+ Expand
10

Acute brain slice preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
A P7–P14 mouse was anesthetized in a sealed chamber containing the inhalation anesthetic isoflurane in an upward flowing BSL2 cabinet. After decapitation, the brain was quickly removed and immersed in the ice-cold oxygenated slicing solution. A coronal cut was made in the rear of the cortical region to separate motor cortex and cerebellum. A sagittal cut was made through the middle line of the vermis of the cerebellum. Both cortex and cerebellum were glued on the same cutting stage, 300–400 μM slices were cut with a LEICA VT1200S tissue slicer (Leica Microsystems, Wetzlar, Germany). From each brain 4 coronal cortical slices (400 μM) including motor cortex or/and 4 sagittal cerebellum slices (300 μM, lateral) were collected and moved into the incubation chamber with a transfer pipet. Slices were kept at 34°C for 30 min, then left to recover at room temperature for at least 60 min before electrophysiological recordings.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!